FC931588

Overview
NameFC931588
Unique NameFC931588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931588_ssr25 microsatellite FC931588_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr124 microsatellite FC931588_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr185 microsatellite FC931588_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34
Identity = 82/155 (52.90%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CVA  DL + + VNG  CK        DFF   L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AGL
Sbjct:   22 ANDPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGL 176          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.276e-33
Identity = 80/154 (51.95%), Postives = 95/154 (61.69%), Query Frame = 1
Query:  190 AADPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CVA D    + VNG  CK        DFF   L  P  TNN  GS VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPR +EI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G +PA   AGL
Sbjct:   22 AYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGL 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.667e-33
Identity = 80/154 (51.95%), Postives = 95/154 (61.69%), Query Frame = 1
Query:  190 AADPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CVA D    + VNG  CK        DFF   L  P  TNN  GS VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPR +EI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G +PA   AGL
Sbjct:   22 AYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGL 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.667e-33
Identity = 82/155 (52.90%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CVA  D  + + VNG  CK        DFFS  L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AGL
Sbjct:   21 AYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGL 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.667e-33
Identity = 82/155 (52.90%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CVA  D  + + VNG  CK        DFFS  L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AGL
Sbjct:   21 AYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGL 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.667e-33
Identity = 80/154 (51.95%), Postives = 95/154 (61.69%), Query Frame = 1
Query:  190 AADPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CVA D    + VNG  CK        DFF   L  P  TNN  GS VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPR +EI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G +PA   AGL
Sbjct:   22 AYDPSPLQDFCVAIDDLKGVFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGL 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.667e-33
Identity = 82/155 (52.90%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CVA  D  + + VNG  CK        DFFS  L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AGL
Sbjct:   21 AYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGL 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.667e-33
Identity = 81/155 (52.26%), Postives = 97/155 (62.58%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CVA  DL + + VNG  CK        DFF   L +  +TNN   S VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AGL
Sbjct:   22 AYDPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGL 176          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.206e-33
Identity = 76/151 (50.33%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            A DP+ LQD CVADL    + VNG  CK      D   FS KLAK   T+   GS VT  +V   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE F+ PRGL+HFQ N G   AS++
Sbjct:   23 ATDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMV 173          

HSP 2 Score: 25.0238 bits (53), Expect = 2.206e-33
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPV 695
            NSQ  G   + LTLF S PP+
Sbjct:  177 NSQNPGIVFVPLTLFGSNPPI 197          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.742e-33
Identity = 76/151 (50.33%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            A D + LQD CVADL S + VNG  CK   +  D   FS K+A     N N  GS VT  +V   PG+NTLGVS+ R+D+APGG NPPH HPRATE+  VL G+L VG      T N   SK ++ GE FV PRGL+HFQ N G   A+++
Sbjct:   26 ATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMV 176          

HSP 2 Score: 25.0238 bits (53), Expect = 3.742e-33
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPV 695
            NSQ  G   + LTLF S PP+
Sbjct:  180 NSQNPGIVFVPLTLFGSNPPI 200          
The following BLAST results are available for this feature:
BLAST of FC931588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GL114_ARATH9.774e-3452.90Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL118_ARATH1.276e-3351.95Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL120_ARATH1.667e-3351.95Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL119_ARATH1.667e-3352.90Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL117_ARATH1.667e-3352.90Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL116_ARATH1.667e-3351.95Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL115_ARATH1.667e-3352.90Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL113_ARATH1.667e-3352.26Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GER2_WHEAT2.206e-3350.33Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]
GL35_ORYSJ3.742e-3350.33Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC34106G09EF PostHarvP1 Citrus clementina cDNA clone C34106G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931588 ID=FC931588; Name=FC931588; organism=Citrus clementina; type=EST; length=723bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAGT
AACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTAATAGCCAGCTGCAGGGG
ACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGGA
TATGTATGACTAGACTTTCAGAT
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