FC931588

Overview
NameFC931588
Unique NameFC931588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931588_ssr25 microsatellite FC931588_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr124 microsatellite FC931588_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr185 microsatellite FC931588_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.872e-33
Identity = 76/151 (50.33%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            A D + LQD CVADL S + VNG  CK   +  D   FS K+A     N N  GS VT  +V   PG+NTLGVS+ R+D+APGG NPPH HPRATE+  VL G+L VG      T N   SK ++ GE FV PRGL+HFQ N G   A+++
Sbjct:   28 ATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMV 178          

HSP 2 Score: 25.0238 bits (53), Expect = 4.872e-33
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPV 695
            NSQ  G   + LTLF S PP+
Sbjct:  182 NSQNPGIVFVPLTLFGSNPPI 202          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.345e-33
Identity = 76/151 (50.33%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            A D + LQD CVADL S + VNG  CK   +  D   FS K+A     N N  GS VT  +V   PG+NTLGVS+ R+D+APGG NPPH HPRATE+  VL G+L VG   T    N   SK ++ GE FV PRGL+HFQ N G   A+++
Sbjct:   28 ATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMV 178          

HSP 2 Score: 25.0238 bits (53), Expect = 6.345e-33
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPV 695
            NSQ  G   + LTLF S PP+
Sbjct:  182 NSQNPGIVFVPLTLFGSNPPI 202          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.274e-33
Identity = 84/152 (55.26%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            DP  LQD CVA D  S + VNG  CK        DFF+  L     T N  GS VT  NV  IPGLNTLGVSL RID+APGG NPPHTHPRATEI+ V+EG L VGF T+    N L SK +  G+ FVFP G++HFQ N G   A   AGL
Sbjct:   26 DPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGL 177          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.379e-32
Identity = 75/151 (49.67%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            +++P  LQD CVADL    + VNG  CK      D   FS KLAK   T+   GS VT  NV   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE F+ PRGL+HFQ N G   AS++
Sbjct:   23 SSNPHPLQDFCVADLDGKAVSVNGHMCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMV 173          

HSP 2 Score: 23.8682 bits (50), Expect = 2.379e-32
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 3
Query:  627 WLNSQLQGTQNIALTLFASTPPV 695
            + NSQ      + LTLF S PP+
Sbjct:  175 FFNSQSPSVVFVPLTLFGSNPPI 197          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.407e-32
Identity = 72/151 (47.68%), Postives = 98/151 (64.90%), Query Frame = 1
Query:  181 NTAAADPEMLQDVCVADLTSPIKVN----GFPCKANFSEM--DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPA 615
            +T AADPE +QD CVA   +  + +    GFPCK   + +  DFF   LA   +T+N FG+++   NV+  P LNTLGV++ R+D APGG+NP H+HPRA E+V V+ G++ VGF +TA    SK + +GE F  PRGL+HFQ N GN  A
Sbjct:   31 STCAADPEPIQDFCVAVPRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASA 181          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.144e-32
Identity = 77/158 (48.73%), Postives = 95/158 (60.13%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP---IKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CV  +  P   + VNG  CK     +  DF    L  PA T+N  G   T      +PGLNTLG+S+AR+D+AP G+NPPHTHPRATE+  VLEG   VGF T+      N L +K + KG+ FVFP+GL+HFQ N GN P   I+GL
Sbjct:   22 ATDPTQLQDFCVG-VNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGL 178          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.044e-32
Identity = 74/150 (49.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  193 ADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            +DP+ LQD CVADL    + VNG  CK      D   FS KL K   T+   GS VT  +V   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE FV PRGL+HFQ N G   A ++
Sbjct:    1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMV 150          

HSP 2 Score: 24.6386 bits (52), Expect = 4.044e-32
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPV 695
            NSQ  G   + LTLF S PP+
Sbjct:  154 NSQNPGIVFVPLTLFGSDPPI 174          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.038e-31
Identity = 80/154 (51.95%), Postives = 94/154 (61.04%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP--IKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A+DP  LQD CV+  TS   + VNG  CK     +  DFF   L       +  GSTVTA NV  + GLNTLG+SL RIDYA  G NPPHTHPRATEI+ V +G L VGF T+   N L SK + +G+ FVFP GL+HFQ N G  PA   A L
Sbjct:   24 ASDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAAL 177          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.476e-31
Identity = 79/155 (50.97%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLT--SPIKVNGFPCKAN--FSEMDFFSDKLAKPAATNNT-FGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A+DP  LQD C+   T  + + VNG  CK     +  DF+   L K   T ++  GS VT  NV  IPGLNTLG+SL RIDY   G NPPHTHPRATEI+ V EG L VGFF++   N L +K++ KG+ FVFP GL+HFQ N G  PA   A L
Sbjct:   24 ASDPSPLQDFCIGVNTPANALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTVNVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFPENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASL 178          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 78/154 (50.65%), Postives = 95/154 (61.69%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP--IKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A+DP  LQD CV   T    + VNG  CK     +  DFF   L +    N   GS VTA NV  +PGLNTLG+SL RIDY   G NPPHTHPRA+E+++V  G L VGF T+   N L SK++ +G+ FVFP+GL+HFQ N G  PA   AGL
Sbjct:   22 ASDPSSLQDFCVGVNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNNLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGL 175          
The following BLAST results are available for this feature:
BLAST of FC931588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GL36_ORYSJ4.872e-3350.33Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ6.345e-3350.33Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL17_ARATH8.274e-3355.26Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GER3_WHEAT2.379e-3249.67Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL37_ORYSJ2.407e-3247.68Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GLP1_MESCR3.144e-3248.73Germin-like protein OS=Mesembryanthemum crystallin... [more]
OXO1_HORVU4.044e-3249.33Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]
GL111_ARATH2.038e-3151.95Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL112_ARATH3.476e-3150.97Putative germin-like protein subfamily 1 member 12... [more]
GL19_ARATH4.540e-3150.65Putative germin-like protein subfamily 1 member 9 ... [more]

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Properties
Property NameValue
Genbank descriptionC34106G09EF PostHarvP1 Citrus clementina cDNA clone C34106G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931588 ID=FC931588; Name=FC931588; organism=Citrus clementina; type=EST; length=723bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAGT
AACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTAATAGCCAGCTGCAGGGG
ACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGGA
TATGTATGACTAGACTTTCAGAT
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