FC931588

Overview
NameFC931588
Unique NameFC931588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931588_ssr25 microsatellite FC931588_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr124 microsatellite FC931588_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr185 microsatellite FC931588_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30
Identity = 75/157 (47.77%), Postives = 98/157 (62.42%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVT-----AANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A DP  LQD CVAD TS ++VNG PCK  A  +  DFF   + +PAA     G+T +      A    IPGLNTLG S AR+D APGG+ PPH HPRA+E   VL G +  GF T+   + +V+K +++G+ F  P+GLVHF  NNG+ PA++ A L
Sbjct:   28 AFDPNPLQDFCVADPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGR-GATASRRYGFTARSVDIPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASL 183          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30
Identity = 79/156 (50.64%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  184 TAAADPEMLQDVCVADLTSP--IKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            T A+DP  LQD CV+  +S   + VNG  CK     +  DFF   L       +  GSTVTA NV  + GLNTLG+SL RIDYA  G NPPHTHPRATEI+ V  G L VGF T+   N L +K + +G+ FVFP GL+HFQ N G  PA   A L
Sbjct:   22 TIASDPSQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAAL 177          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.236e-28
Identity = 76/151 (50.33%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 630
            DP  LQD CVA   T+ + VNG  CK   + +  DF    L     T N  GS VT  +V  IPGLNTLGVSLAR+D+A GG NPPH HPRATEI+ V +G+L VGF ++    N L  K +K+G+ FVFP GL+HFQ N     A   AG
Sbjct:   27 DPNPLQDFCVAASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAG 177          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 73/155 (47.10%), Postives = 98/155 (63.23%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGLIAS 642
            DP  LQD CVA + T+ + VNG  CK     +  DFF   L  P  T+N  G++VT  +V+ IPGLNTLG+++AR+D+APGG  PPH HPRA++I+ VL+GQL VGF ++ +    L SK +  G+ F FP GLV F  N G   A V  G++ S
Sbjct:   26 DPNPLQDYCVATNGTNRVFVNGKFCKDPKLVTANDFFYSGLNIPGNTSNRLGASVTDVDVRRIPGLNTLGIAIARLDFAPGGQLPPHIHPRASQIILVLKGQLSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHA-VAIGVVGS 179          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 62/138 (44.93%), Postives = 81/138 (58.70%), Query Frame = 1
Query:  211 QDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            QD CVADL +    +G+PCK+  +  DFF   L  P  T+N  G     AN+ T PGLNTLG+S+  +  APGG N PH+HP  TE   V+EG + VGF TT   L SK I  G+ FV P GL+H++ N G     ++
Sbjct:   41 QDFCVADLQATPTNSGYPCKSQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTNYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLL 178          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.977e-27
Identity = 68/150 (45.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            +P  LQD CVA + T+ + VNG  CK     +  DF++  L  P  T+   G  +T  +V+ +PGLNTLGV +ARID+APGG+ PPHTHPR +EI  V++G+L VGF ++      L +K +  G+ FVFP+GL+ F  N G   A VIA
Sbjct:   26 EPSPLQDYCVATNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIA 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.195e-27
Identity = 67/150 (44.67%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            DP  LQD CVA + T+ + VNG  CK     +  DF++  L  P  T    G+  T  +V+ +PGLNTLGV +AR D+APGG++PPHTHPR ++I  V++G+L VGF ++      L +K +  G+ FVFP+GL+HF  N G   A VI+
Sbjct:   26 DPSPLQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVIS 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 67/158 (42.41%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  184 TAAADPEMLQDVCVAD-LTSPIKVNGF----PCKANFSEM---DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            T A+DP+ +QD C+   +TSP   + F    PCK N SE+   DF    L K A      G        +  PGLNTLG+S  R D  PG INPPH HPRATE+  +++G++  GF  + N + +K +++GE  V+P+GLVHFQ N G+V A+++ GL
Sbjct:   22 TLASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCK-NSSEVTTEDFVFSGL-KTAGNFTETGFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDSNNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGL 177          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.397e-26
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPA 615
            +QD CVAD  +P    G+ CK  A  +  DF    L     T N F + VT A     PG+N LG+SLAR+D  PGG+ P HTHP A+E++ V++G +  GF  + N    K++KKG+  VFP+GL+HFQ N G+ PA
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPA 157          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.501e-26
Identity = 60/138 (43.48%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCKA--NFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPA 615
            +QD CVAD   P   +G+ CK     +E DF    L K   T+N   + VT A      GLN L VSLAR+D A GG+ P HTHP A+E++ V++G +  GF ++AN +  K++ +G++ VFP+GL+HFQ N+G  PA
Sbjct:   22 VQDFCVADPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPA 159          
The following BLAST results are available for this feature:
BLAST of FC931588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GL51_ORYSJ2.943e-3047.77Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL110_ARATH2.943e-3050.64Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL16_ARATH1.236e-2850.33Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL12_ARATH1.615e-2847.10Putative germin-like protein subfamily 1 member 2 ... [more]
GLT3_ARATH6.136e-2844.93Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL15_ARATH3.977e-2745.33Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL14_ARATH5.195e-2744.67Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL32_ARATH3.367e-2642.41Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
AB19B_PRUPE4.397e-2644.20Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GLP1_SINAL7.501e-2643.48Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC34106G09EF PostHarvP1 Citrus clementina cDNA clone C34106G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931588 ID=FC931588; Name=FC931588; organism=Citrus clementina; type=EST; length=723bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAGT
AACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTAATAGCCAGCTGCAGGGG
ACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGGA
TATGTATGACTAGACTTTCAGAT
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