FC931588

Overview
NameFC931588
Unique NameFC931588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931588_ssr25 microsatellite FC931588_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr124 microsatellite FC931588_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr185 microsatellite FC931588_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 57/152 (37.50%), Postives = 86/152 (56.58%), Query Frame = 1
Query:  184 TAAADPEMLQDVC--VADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            + + D + +QD C       S   +NG+PCK     +  DF S KL +   T+N   S VT       PGLNTLG+S++R D    G  P H+HPR++E++FV++G +  GF  T N +    ++KG+ FVFP+GL+HF  + G  PA+  +
Sbjct:   15 SVSGDSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFS 166          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.950e-22
Identity = 55/150 (36.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFS----DKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            A DP++L D  +    +P+ + G          DFF+     K+   ++       TVT A +   P LN   VS A + + P  +NPPHTHPR+ E++ V++G L VGF  T N L ++ +  G+ FVFP+G+VHFQ N+GN PA  ++
Sbjct:   25 AGDPDILTDYVIPANGNPMNITG----------DFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALS 164          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.852e-22
Identity = 66/154 (42.86%), Postives = 90/154 (58.44%), Query Frame = 1
Query:  187 AAADPEMLQDVCVADLTS--PIKVN---GFPCK--ANFSEMDF-FSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDY-APGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASV 621
            A  DP+ +QD CV D     P+++     +PC+  AN +  DF FS   A    +  T  + V+    Q  PGL+TLG+S AR D  A GG+NPPH HPRATE   VL G++  GF  +   L +K +++GE  VFPR +VHFQ N G+ PA+V
Sbjct:   21 ARGDPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQ-FPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATV 173          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.261e-21
Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKV-NGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNV 609
            + D CVA+        +GF CK  A  +  DF    LAKP  T N   + VT A V   PG+  LGV+LAR+D APGG+ P HTHP A+EI+ V+EG +   F ++ N +  K++  G+  VFP+GL+ FQ+  G +
Sbjct:   24 VNDFCVANGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISSGNKVYEKALYPGDVMVFPQGLLDFQEITGKI 160          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFS-DKLAKPAATNNTF-----GSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPA-------SVIAGLIA 639
            A DP++L D  +   ++   + G          DFF+      P + N +        TVT A +   P LN   VS A + Y P  +NPPHTHPR+ E++ +++G L VGF  T N L ++ +  G+ FVFP+G+VHFQ N+GN PA       S  AGL++
Sbjct:   23 AGDPDILTDYVIPAGSNAENITG----------DFFTFTGFRNPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVS 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 59/141 (41.84%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  193 ADPEMLQDVCVADLTSPIKV--NGFPCKANFSEM--DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNG 603
            +D   LQDVC        K+  NGF CK+  + M  DF +  L      +N   S+         PGLNTLG+S+AR D A  G   PH+HPRA+E++FV  G +  GFF T   L  K++ +G+ F+FPRGLVHF  N G
Sbjct:   23 SDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGDVFIFPRGLVHFIMNYG 163          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  181 NTAAADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA--NVLVSKSIKKGENFVFPRGLVHFQKNNG 603
            +  AADP++L D  V   T P  ++G    A F+  +  +     PA        TVT A     P L    VS A + +  G +NPPH HPRA+E++ V++G L VG    A    + +++++ G+ FVFP+G+VHFQ NNG
Sbjct:   22 SAGAADPDILTDFVVPSDTDPSGIDG----AFFTYKNLVTGNSGDPAKL------TVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNG 154          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 50/152 (32.89%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  184 TAAADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMDFFSDKLAKPAATNNTFGSTVTAA--NVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANV-LVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            ++AA PE++  +    L +P +++     K N    DF + KL     T  T G TV  +  N   + G N + +++  I+    GIN PHTHPRATEI F+  G+ + GFF       +  +++ G   VFP+G +HF+ N    PA  +A
Sbjct:   43 SSAASPELVAQL----LNAPSELDRIKLLKDNQFVFDFKNSKLG---VTQGTGGKTVATSRTNFPAVIGHN-VAMTVGFIEAC--GINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVA 184          
The following BLAST results are available for this feature:
BLAST of FC931588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GL34_ARATH2.258e-2237.50Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL92_ORYSJ2.950e-2236.67Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL24_ORYSJ3.852e-2242.86Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GLP1_IPONI3.261e-2141.61Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL93_ORYSJ1.619e-2036.20Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL111_ORYSJ1.619e-2041.84Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL91_ORYSJ1.086e-1636.36Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
SR1A_PHYPO8.902e-1132.89Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106G09EF PostHarvP1 Citrus clementina cDNA clone C34106G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931588 ID=FC931588; Name=FC931588; organism=Citrus clementina; type=EST; length=723bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAGT
AACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTAATAGCCAGCTGCAGGGG
ACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGGA
TATGTATGACTAGACTTTCAGAT
back to top