FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOPA (30S ribosomal protein S16 OS=Rhodopseudomonas palustris GN=rpsP PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ L+ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDTAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_JANSC (30S ribosomal protein S16 OS=Jannaschia sp. (strain CCS1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            M ++IRLAR G K +PFYR++A+DSR PRDG+ +E LG YNPL  +DS  R+ ++ +RV++WL  GAQP+D + R L  AG  P
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVASDSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDMERVQHWLDQGAQPTDRISRFLEAAGHTP 84          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_AGRVS (30S ribosomal protein S16 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 43/82 (52.44%), Postives = 63/82 (76.83%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+ G+D+ KR+ LN DR+K W++ GAQP+D V + L  AGL
Sbjct:    1 MSLKIRLARGGSKKRPYYQIVIADARSPRDGRFLEKVGSWNPMLGKDNEKRVELNADRIKEWIAKGAQPTDRVLKFLAEAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_SINMW (30S ribosomal protein S16 OS=Sinorhizobium medicae (strain WSM419) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +RV++W+  GAQP+D V R L +AGL
Sbjct:    1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIDQGAQPTDRVLRFLDQAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHORT (30S ribosomal protein S16 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M +RIRLAR G K +PFYR++ ADSRSPRDG+ +E LG ++P+  +D  +R+ L  +RVKYWL VGA PSD V R L  +GL
Sbjct:    1 MSLRIRLARGGAKKRPFYRIVVADSRSPRDGRFIEKLGTFDPMLPRDHERRVVLKDERVKYWLGVGALPSDRVARFLGLSGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ZYMMO (30S ribosomal protein S16 OS=Zymomonas mobilis GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V IRL+R G K +PFYR++ A+SRSPRDG  +E +G YNP   +D+  R+ ++ DR ++WLSVGAQP+D V R L  AGLL
Sbjct:    1 MAVSIRLSRGGAKRRPFYRIVIANSRSPRDGSFIEKIGSYNPQLPKDNENRVIVDLDRARHWLSVGAQPTDRVARFLDAAGLL 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_SILST (30S ribosomal protein S16 OS=Silicibacter sp. (strain TM1040) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +DS +R+ ++ ++++ WL  GAQP+D V R+L  AG+
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDIEKIQAWLDKGAQPTDRVARMLEAAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHISN (30S ribosomal protein S16 OS=Rhizobium sp. (strain NGR234) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+  +D  KR+ LN +RV +W++ GAQP+D V R L +AGL
Sbjct:    1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKIGSWNPMLSKDDEKRIELNAERVSHWIAQGAQPTDRVLRFLDQAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHIEC (30S ribosomal protein S16 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +R+K+WL  GAQP+D V R L  AG+
Sbjct:    1 MALKIRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWLDNGAQPTDRVLRFLNEAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHIE6 (30S ribosomal protein S16 OS=Rhizobium etli (strain CIAT 652) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +R+K+WL  GAQP+D V R L  AG+
Sbjct:    1 MALKIRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWLDNGAQPTDRVLRFLNEAGV 82          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_RHOPA4.817e-1957.3230S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_JANSC4.817e-1952.3830S ribosomal protein S16 OS=Jannaschia sp. (strai... [more]
RS16_AGRVS4.817e-1952.4430S ribosomal protein S16 OS=Agrobacterium vitis (... [more]
RS16_SINMW8.216e-1952.4430S ribosomal protein S16 OS=Sinorhizobium medicae... [more]
RS16_RHORT8.216e-1956.1030S ribosomal protein S16 OS=Rhodospirillum rubrum... [more]
RS16_ZYMMO1.073e-1854.2230S ribosomal protein S16 OS=Zymomonas mobilis GN=... [more]
RS16_SILST1.401e-1852.4430S ribosomal protein S16 OS=Silicibacter sp. (str... [more]
RS16_RHISN1.401e-1851.2230S ribosomal protein S16 OS=Rhizobium sp. (strain... [more]
RS16_RHIEC1.401e-1853.6630S ribosomal protein S16 OS=Rhizobium etli (strai... [more]
RS16_RHIE61.401e-1853.6630S ribosomal protein S16 OS=Rhizobium etli (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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