FC931767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOPA (30S ribosomal protein S16 OS=Rhodopseudomonas palustris GN=rpsP PE=1 SV=3) HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19 Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL +D+ R+ L+ D+VK WL+ GAQPSD V R L AG+ Sbjct: 1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDTAGV 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_JANSC (30S ribosomal protein S16 OS=Jannaschia sp. (strain CCS1) GN=rpsP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19 Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682 M ++IRLAR G K +PFYR++A+DSR PRDG+ +E LG YNPL +DS R+ ++ +RV++WL GAQP+D + R L AG P Sbjct: 1 MAMKIRLARGGSKKRPFYRIVASDSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDMERVQHWLDQGAQPTDRISRFLEAAGHTP 84
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_AGRVS (30S ribosomal protein S16 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19 Identity = 43/82 (52.44%), Postives = 63/82 (76.83%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+ G+D+ KR+ LN DR+K W++ GAQP+D V + L AGL Sbjct: 1 MSLKIRLARGGSKKRPYYQIVIADARSPRDGRFLEKVGSWNPMLGKDNEKRVELNADRIKEWIAKGAQPTDRVLKFLAEAGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_SINMW (30S ribosomal protein S16 OS=Sinorhizobium medicae (strain WSM419) GN=rpsP PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19 Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+ +D KR+ LN +RV++W+ GAQP+D V R L +AGL Sbjct: 1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIDQGAQPTDRVLRFLDQAGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHORT (30S ribosomal protein S16 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsP PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19 Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M +RIRLAR G K +PFYR++ ADSRSPRDG+ +E LG ++P+ +D +R+ L +RVKYWL VGA PSD V R L +GL Sbjct: 1 MSLRIRLARGGAKKRPFYRIVVADSRSPRDGRFIEKLGTFDPMLPRDHERRVVLKDERVKYWLGVGALPSDRVARFLGLSGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ZYMMO (30S ribosomal protein S16 OS=Zymomonas mobilis GN=rpsP PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18 Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679 M V IRL+R G K +PFYR++ A+SRSPRDG +E +G YNP +D+ R+ ++ DR ++WLSVGAQP+D V R L AGLL Sbjct: 1 MAVSIRLSRGGAKRRPFYRIVIANSRSPRDGSFIEKIGSYNPQLPKDNENRVIVDLDRARHWLSVGAQPTDRVARFLDAAGLL 83
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_SILST (30S ribosomal protein S16 OS=Silicibacter sp. (strain TM1040) GN=rpsP PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18 Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +DS +R+ ++ ++++ WL GAQP+D V R+L AG+ Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDIEKIQAWLDKGAQPTDRVARMLEAAGV 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHISN (30S ribosomal protein S16 OS=Rhizobium sp. (strain NGR234) GN=rpsP PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18 Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+ +D KR+ LN +RV +W++ GAQP+D V R L +AGL Sbjct: 1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKIGSWNPMLSKDDEKRIELNAERVSHWIAQGAQPTDRVLRFLDQAGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHIEC (30S ribosomal protein S16 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpsP PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18 Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+ +D KR+ LN +R+K+WL GAQP+D V R L AG+ Sbjct: 1 MALKIRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWLDNGAQPTDRVLRFLNEAGV 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHIE6 (30S ribosomal protein S16 OS=Rhizobium etli (strain CIAT 652) GN=rpsP PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18 Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+ +D KR+ LN +R+K+WL GAQP+D V R L AG+ Sbjct: 1 MALKIRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWLDNGAQPTDRVLRFLNEAGV 82 The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bpback to top |