FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PARL1 (30S ribosomal protein S16 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +PFYRV+ AD+RSPRDG+ +E +G +NPL  +D+ +R+ ++ +R K+WLSVGA P+D V R L  AG+
Sbjct:    1 MALKIRLARGGAKKRPFYRVVIADTRSPRDGRFIEKIGTFNPLLPKDNAERIKVDIERAKHWLSVGALPTDRVARFLDDAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_MAGSA (30S ribosomal protein S16 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M ++IRL+R G K +PFY+++ AD+R+PRDG+ +E +G YNP+   D+G+R  L+ DRVK+WLSVGAQP+D + R     GL+
Sbjct:    1 MALKIRLSRGGAKKRPFYKIVVADARAPRDGRFIEKVGTYNPMLPNDNGQRWILDEDRVKHWLSVGAQPTDRLVRFFADKGLV 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PARDP (30S ribosomal protein S16 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P Y ++A+DSR PRDG+ +E LG YNPL  +DS  R+ +N +RV+YWL  GAQP+D V R L  AG+
Sbjct:    1 MAMKIRLARGGSKKRPHYAIVASDSRMPRDGRFIEKLGTYNPLLPKDSEDRIKMNLERVQYWLGQGAQPTDRVARFLEAAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_NOVAD (30S ribosomal protein S16 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V +RL+R G K +P+Y+++ ++SR+PRDGK+LE +G YNPL  +D   R+ L  DRV+YW+ VGAQP+D V R+L +AG+
Sbjct:    1 MSVSMRLSRGGSKKRPYYKIVVSNSRAPRDGKYLEQVGTYNPLLAKDDENRVRLIEDRVRYWIGVGAQPTDRVARMLDKAGI 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_AGRRK (30S ribosomal protein S16 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD+RSPRDG+ LE +G +NP+  +D  KR+ L+ DR+K+WL  GAQP+D V R L  AG+
Sbjct:    1 MALKIRLARGGSKKRPYYHVVIADARSPRDGRFLEKVGSWNPMLAKDDAKRVELDADRIKHWLDNGAQPTDRVLRFLDEAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICBR (30S ribosomal protein S16 OS=Rickettsia bellii (strain RML369-C) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+  +DS +R+ L  DRV+YWL  GA+P+D V R + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYNPMLAKDSNERVVLKADRVEYWLKSGAKPTDRVARFIEQAGI 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICB8 (30S ribosomal protein S16 OS=Rickettsia bellii (strain OSU 85-389) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+  +DS +R+ L  DRV+YWL  GA+P+D V R + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYNPMLAKDSNERVVLKADRVEYWLKSGAKPTDRVARFIEQAGI 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOP2 (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ L+ D+VK WL+ GAQPSD V R L   G+
Sbjct:    1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDITGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHILW (30S ribosomal protein S16 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +R+K+W+  GAQP+D V R L  AG+
Sbjct:    1 MALKIRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWIENGAQPTDRVLRFLDEAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHIL3 (30S ribosomal protein S16 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +R+K+W+  GAQP+D V R L  AG+
Sbjct:    1 MALKIRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWIEHGAQPTDRVLRFLDEAGV 82          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_PARL11.401e-1852.4430S ribosomal protein S16 OS=Parvibaculum lavament... [more]
RS16_MAGSA1.401e-1850.6030S ribosomal protein S16 OS=Magnetospirillum magn... [more]
RS16_PARDP1.830e-1853.6630S ribosomal protein S16 OS=Paracoccus denitrific... [more]
RS16_NOVAD1.830e-1851.2230S ribosomal protein S16 OS=Novosphingobium aroma... [more]
RS16_AGRRK1.830e-1852.4430S ribosomal protein S16 OS=Agrobacterium radioba... [more]
RS16_RICBR2.391e-1852.4430S ribosomal protein S16 OS=Rickettsia bellii (st... [more]
RS16_RICB82.391e-1852.4430S ribosomal protein S16 OS=Rickettsia bellii (st... [more]
RS16_RHOP22.391e-1856.1030S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_RHILW2.391e-1852.4430S ribosomal protein S16 OS=Rhizobium leguminosar... [more]
RS16_RHIL32.391e-1852.4430S ribosomal protein S16 OS=Rhizobium leguminosar... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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