FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACJO (30S ribosomal protein S16 OS=Lactobacillus johnsonii GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IR+ R G K KPFYR++ ADSR PRDG+ +E +GYYNPL   D  K   L  D++  WL  GAQPSD V+ +L +AGL+
Sbjct:    1 MSVKIRMRRMGSKRKPFYRIVVADSRMPRDGRFIEEVGYYNPLTNPDEVK---LEEDKIFEWLEKGAQPSDTVRSLLSKAGLM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACGA (30S ribosomal protein S16 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IR+ R G K KPFYR++ ADSR PRDG+ +E +GYYNPL   D  K   L  D++  WL  GAQPSD V+ +L +AGL+
Sbjct:    1 MSVKIRMRRMGSKRKPFYRIVVADSRMPRDGRFIEEVGYYNPLTNPDEVK---LEEDKIFEWLEKGAQPSDTVRSLLSKAGLM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_EHRRG (30S ribosomal protein S16 OS=Ehrlichia ruminantium (strain Gardel) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            M V+IRLARFG K +PFYRV+ ADSR  RDG+ +E+LG+YNP+  ++    + +  DR+KYWLSVGAQP++ +
Sbjct:    1 MSVKIRLARFGAKKRPFYRVVVADSRVARDGRFIELLGFYNPMLPKEHPSFLKVKIDRLKYWLSVGAQPTERI 73          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPZ (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPM (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M28 GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPG (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPF (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPD (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPC (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPB (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_LACJO9.084e-1853.0130S ribosomal protein S16 OS=Lactobacillus johnson... [more]
RS16_LACGA9.084e-1853.0130S ribosomal protein S16 OS=Lactobacillus gasseri... [more]
RS16_EHRRG9.084e-1854.7930S ribosomal protein S16 OS=Ehrlichia ruminantium... [more]
RS16_STRPZ1.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRPM1.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRPG1.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRPF1.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRPD1.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRPC1.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRPB1.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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