FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CUPTR (30S ribosomal protein S16 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQ-DSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K +PF+ ++A DSRS RDG+ +E +G+YNPL  + + G R+    DR+ YW  VGAQ S  V R++
Sbjct:    1 MVVIRLARGGSKKRPFFNIVATDSRSRRDGRFIERVGFYNPLAAEGEEGLRLAQ--DRLAYWQGVGAQLSPTVARLV 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BUCAP (30S ribosomal protein S16 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +VRIRLA +G K +PFY+++ ADSR  RDG+ +E LG++NP+  +     + LN +R++YW   GAQ S   Q+++
Sbjct:    1 MVRIRLALYGTKKRPFYKMVVADSRFSRDGRFIEKLGHFNPV-SKCQNSTLKLNLNRIEYWQGKGAQISKRSQKLI 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BIFLO (30S ribosomal protein S16 OS=Bifidobacterium longum GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M  +IRL R G K   FYRV+  DSR  RDGK +E +G YNP         + +  DR +YWL VGAQPS+PV ++L
Sbjct:    1 MATKIRLKRQGKKFYAFYRVVVVDSRKKRDGKVIEEIGTYNP---NTQPSTIQIKSDRAQYWLGVGAQPSEPVFKLL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BIFLD (30S ribosomal protein S16 OS=Bifidobacterium longum (strain DJO10A) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M  +IRL R G K   FYRV+  DSR  RDGK +E +G YNP         + +  DR +YWL VGAQPS+PV ++L
Sbjct:    1 MATKIRLKRQGKKFYAFYRVVVVDSRKKRDGKVIEEIGTYNP---NTQPSTIQIKSDRAQYWLGVGAQPSEPVFKLL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_AZOSB (30S ribosomal protein S16 OS=Azoarcus sp. (strain BH72) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGL--NFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PF+ ++AADSR+ RDG+ +E +GYYNP+    SG   GL  N +R+ YW   GAQ S  V R++ +A
Sbjct:    1 MVVIRLARGGAKKRPFFNIVAADSRNRRDGRFIERVGYYNPVA---SGAEKGLVVNTERLAYWEQNGAQLSPTVARLVKQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_XANC5 (30S ribosomal protein S16 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRI 658
            +V+IRL R G K +PFY ++  D RS RDG+++E LGYYNP+  Q +  R+ L+  RV +W+  GAQ +D V+ +
Sbjct:    1 MVKIRLTRGGAKKRPFYHIIVTDVRSARDGRNIERLGYYNPV-AQGAEPRIVLDVARVDHWVGNGAQLTDKVRNL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_XANAC (30S ribosomal protein S16 OS=Xanthomonas axonopodis pv. citri GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRI 658
            +V+IRL R G K +PFY ++  D RS RDG+++E LGYYNP+  Q +  R+ L+  RV +W+  GAQ +D V+ +
Sbjct:    1 MVKIRLTRGGAKKRPFYHIIVTDVRSARDGRNIERLGYYNPV-AQGAEPRIVLDVARVDHWVGNGAQLTDKVRNL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_WOLSU (30S ribosomal protein S16 OS=Wolinella succinogenes GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            M   IRL R G K KPFYR++  DSR  RDG  +E +GYYNPL      K    + +R+KYW+SVGA+ SD V
Sbjct:    1 MATVIRLTRLGRKKKPFYRMVVTDSRKRRDGGWVEAIGYYNPLAETPVVK---FDAERLKYWVSVGAKMSDRV 70          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_UNCTG (30S ribosomal protein S16 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M VR+RL R G   +P+YRV+A D R+ RDG+ +E+LG Y+P+   +  K   +N +R+ YWL +GA+ S+ V  ++
Sbjct:    1 MAVRLRLQRRGKPKRPYYRVVAIDQRAKRDGEPIEILGQYDPIAEDNKFK---VNIERINYWLGIGAKASETVAALI 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRLI (30S ribosomal protein S16 OS=Streptomyces lividans GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 673
            M V+I+L R G    P YR++ ADSR+ RDG+ +E +G Y+P         M ++ +RV YWL VGAQP++PV  IL + G
Sbjct:    1 MAVKIKLKRLGKIRSPHYRIVVADSRTRRDGRAIEEIGKYHPTYNPSV---MEVDAERVAYWLGVGAQPTEPVLAILKKTG 78          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_CUPTR5.703e-1248.0530S ribosomal protein S16 OS=Cupriavidus taiwanens... [more]
RS16_BUCAP5.703e-1243.4230S ribosomal protein S16 OS=Buchnera aphidicola s... [more]
RS16_BIFLO5.703e-1248.0530S ribosomal protein S16 OS=Bifidobacterium longu... [more]
RS16_BIFLD5.703e-1248.0530S ribosomal protein S16 OS=Bifidobacterium longu... [more]
RS16_AZOSB5.703e-1248.1530S ribosomal protein S16 OS=Azoarcus sp. (strain ... [more]
RS16_XANC57.448e-1245.3330S ribosomal protein S16 OS=Xanthomonas campestri... [more]
RS16_XANAC7.448e-1245.3330S ribosomal protein S16 OS=Xanthomonas axonopodi... [more]
RS16_WOLSU7.448e-1250.6830S ribosomal protein S16 OS=Wolinella succinogene... [more]
RS16_UNCTG7.448e-1241.5630S ribosomal protein S16 OS=Uncultured termite gr... [more]
RS16_STRLI7.448e-1244.4430S ribosomal protein S16 OS=Streptomyces lividans... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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