FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRP8 (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M18 GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRP6 (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M6 GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRP3 (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M3 GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRP1 (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M1 GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICCK (30S ribosomal protein S16 OS=Rickettsia canadensis (strain McKiel) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+   D+ +R+ L  DR++YWLS GA+P++ V + + +AG++
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYNPMLASDNSERVVLKKDRIEYWLSTGAKPTERVAKFIEQAGVI 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_EHRRW (30S ribosomal protein S16 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            M V+IRLARFG K +PFYRV+ ADSR  RDG+ +E+LG+YNP+  ++    + +  DR+KYWLSVGAQP++ +
Sbjct:    1 MSVKIRLARFGAKKRPFYRVVVADSRVARDGRFIELLGFYNPMLPKEHPSFLKVKVDRLKYWLSVGAQPTERI 73          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ANATD (30S ribosomal protein S16 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M VRIRL R G KN PFYR++ ADSR+PRDGK ++ +GYYNPL      K   ++ ++ K WLS GAQP+D V+ +L +AG++
Sbjct:    1 MAVRIRLKRMGAKNNPFYRIVVADSRTPRDGKTIDEIGYYNPLKNPADIK---VDVEKAKKWLSYGAQPTDTVKILLKKAGVI 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_HERA2 (30S ribosomal protein S16 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            +VRIRL R G K+KP YRV+ ADS +PRDGK +E +G+YNP   Q   K + +  DR +YWLSVGAQPSD V R+L   G++
Sbjct:    1 MVRIRLRRMGMKHKPAYRVVIADSHAPRDGKFIETIGHYNP---QAQPKVVFIKEDRARYWLSVGAQPSDTVVRLLKNLGVV 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRASO (30S ribosomal protein S16 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V IRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ L+ ++VK WL+ GAQPSD V R L  AG+
Sbjct:    1 MSVVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGYFNPLMPKDNEARLKLDMEKVKGWLAKGAQPSDRVARFLDTAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRASB (30S ribosomal protein S16 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V IRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ L+ ++VK WL+ GAQPSD V R L  AG+
Sbjct:    1 MSVVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGYFNPLMPKDNEARLKLDMEKVKGWLAKGAQPSDRVARFLDAAGV 82          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_STRP81.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRP61.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRP31.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRP11.186e-1753.0130S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_RICCK1.186e-1748.1930S ribosomal protein S16 OS=Rickettsia canadensis... [more]
RS16_EHRRW1.186e-1754.7930S ribosomal protein S16 OS=Ehrlichia ruminantium... [more]
RS16_ANATD1.186e-1751.8130S ribosomal protein S16 OS=Anaerocellum thermoph... [more]
RS16_HERA21.549e-1754.8830S ribosomal protein S16 OS=Herpetosiphon auranti... [more]
RS16_BRASO1.549e-1754.8830S ribosomal protein S16 OS=Bradyrhizobium sp. (s... [more]
RS16_BRASB1.549e-1754.8830S ribosomal protein S16 OS=Bradyrhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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