FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRZT (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRZP (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain P1031) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRZJ (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain JJA) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRU0 (30S ribosomal protein S16 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  DR+  WLS GAQPSD V+ +L +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTLKEDRILDWLSKGAQPSDTVRNLLSKAGVM 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRR6 (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPS (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain CGSP14) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPN (30S ribosomal protein S16 OS=Streptococcus pneumoniae GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPJ (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRPI (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRP7 (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain 70585) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_STRZT2.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRZP2.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRZJ2.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRU02.024e-1751.8130S ribosomal protein S16 OS=Streptococcus uberis ... [more]
RS16_STRR62.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRPS2.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRPN2.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRPJ2.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRPI2.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRP72.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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