FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRP4 (30S ribosomal protein S16 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLTWLANGAQPSDTVRNILSKEGVL 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRP2 (30S ribosomal protein S16 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICTY (30S ribosomal protein S16 OS=Rickettsia typhi GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 40/82 (48.78%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+   D+ +R+ L  DR++YWLS GA+P++ V + + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVIANATAPRDGDFLEKVGTYNPMLASDNSERVVLKKDRIEYWLSTGAKPTERVAKFIEKAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOPB (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V IRLAR G K +P Y V+ ADSR PRDG+ +E LG++NPL  +DS  R+ L+ D+VK W++ GAQPSD V R L  AG+
Sbjct:    1 MSVVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGHFNPLLPKDSEARLKLDLDKVKAWVAKGAQPSDRVARFLDAAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOCS (30S ribosomal protein S16 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            M V+IRL+R G K +PFY ++ A+SR+PRDG  +E +G YNP+   D  +R+ L  DR+K WL+ GAQP+D V R L +A L+P
Sbjct:    1 MSVKIRLSRGGAKKRPFYSIVVANSRAPRDGDFIEKVGTYNPMVPHDHPERVVLQEDRIKEWLAKGAQPTDRVARFLGKANLIP 84          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_DICTD (30S ribosomal protein S16 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            +V+IRL R G KNKP YR++A DSR PRDGKHLE+LG+Y+P   +     + L  +R+ YWLS GAQP+D V  IL R G+
Sbjct:    1 MVKIRLTRVGAKNKPAYRIVAMDSREPRDGKHLEILGFYDP---KTDPATIQLKEERILYWLSQGAQPTDTVLSILKRYGV 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_WOLWR (30S ribosomal protein S16 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 39/73 (53.42%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            M V+IRLARFG K +PFYR++ ADSR+PRDG+ +E +G Y+P+  +D+  R+ +  DR+K+WLSVGAQ ++ V
Sbjct:    1 MAVKIRLARFGAKKRPFYRIVVADSRAPRDGRFIEKIGQYDPMLPKDNKNRVVVKADRLKHWLSVGAQATERV 73          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_WOLPM (30S ribosomal protein S16 OS=Wolbachia pipientis wMel GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 39/73 (53.42%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            M V+IRLARFG K +PFYR++ ADSR+PRDG+ +E +G Y+P+  +D+  R+ +  DR+K+WLSVGAQ ++ V
Sbjct:    1 MAVKIRLARFGAKKRPFYRIVVADSRAPRDGRFIEKIGQYDPMLPKDNKNRVVVKADRLKHWLSVGAQATERV 73          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOP5 (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V IRLAR G K +P Y V+ ADSR PRDG+ +E LG++NPL  +D+  R+ L+ D+VK W++ GAQPSD V R L  AG++
Sbjct:    1 MSVVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGHFNPLLPKDNEARLKLDLDKVKAWVAKGAQPSDRVARFLDAAGVM 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CALS8 (30S ribosomal protein S16 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M VRIRL R G KN PFYR++ ADSRSPRDGK ++ +GYYNPL      K   ++ ++ K WLS GAQP+D V+ +L + G++
Sbjct:    1 MAVRIRLKRMGAKNNPFYRIVVADSRSPRDGKTIDEIGYYNPLKNPADIK---VDVEKAKKWLSNGAQPTDTVKILLKKVGVI 80          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_STRP42.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRP22.024e-1754.2230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_RICTY2.024e-1748.7830S ribosomal protein S16 OS=Rickettsia typhi GN=r... [more]
RS16_RHOPB2.024e-1754.8830S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_RHOCS2.024e-1750.0030S ribosomal protein S16 OS=Rhodospirillum centen... [more]
RS16_DICTD2.024e-1754.3230S ribosomal protein S16 OS=Dictyoglomus turgidum... [more]
RS16_WOLWR2.643e-1753.4230S ribosomal protein S16 OS=Wolbachia sp. subsp. ... [more]
RS16_WOLPM2.643e-1753.4230S ribosomal protein S16 OS=Wolbachia pipientis w... [more]
RS16_RHOP52.643e-1753.0130S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_CALS82.643e-1751.8130S ribosomal protein S16 OS=Caldicellulosiruptor ... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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