FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_GLUDA (30S ribosomal protein S16 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            M ++IRLAR G K +P+Y ++ ADSRSPRDG+ +E +G YNP+   D   R+ L  +R+ +WLS GA P+D V R L  AGL P
Sbjct:    1 MSLKIRLARAGAKKRPYYHIVIADSRSPRDGRFIEKVGAYNPMLPSDHADRVRLVNERITHWLSQGALPTDRVARFLGNAGLAP 84          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_DICT6 (30S ribosomal protein S16 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            +V+IRL R G KNKP YR++A DSR PRDGKHLE+LG+Y+P   +     + L  +R+ YWLS GAQP+D V  IL + G+
Sbjct:    1 MVKIRLTRVGAKNKPAYRIVAMDSREPRDGKHLEILGFYDP---KTDPATIQLKEERILYWLSQGAQPTDTVLSILKKYGV 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RT16_PONAB (28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  443 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP     K + LN DR+++W+  GA  S P++++L  AG  P
Sbjct:   19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFP 98          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RT16_HUMAN (28S ribosomal protein S16, mitochondrial OS=Homo sapiens GN=MRPS16 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  443 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP     K + LN DR+++W+  GA  S P++++L  AG  P
Sbjct:   19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFP 98          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRS7 (30S ribosomal protein S16 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  DRV  WL  GAQPSD V+ +L +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLDWLGKGAQPSDTVRSLLSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRGC (30S ribosomal protein S16 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KP+YR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL  GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPYYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLENGAQPSDTVRNILSKEGVL 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRE4 (30S ribosomal protein S16 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  DRV  WL  GAQPSD V+ +L +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLDWLGKGAQPSDTVRSLLSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRA5 (30S ribosomal protein S16 OS=Streptococcus agalactiae serotype V GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTIKEERVLEWLSKGAQPSDTVRNLLSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRA3 (30S ribosomal protein S16 OS=Streptococcus agalactiae serotype III GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTIKEERVLEWLSKGAQPSDTVRNLLSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRA1 (30S ribosomal protein S16 OS=Streptococcus agalactiae serotype Ia GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTIKEERVLEWLSKGAQPSDTVRNLLSKAGVM 80          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_GLUDA4.508e-1750.0030S ribosomal protein S16 OS=Gluconacetobacter dia... [more]
RS16_DICT64.508e-1753.0930S ribosomal protein S16 OS=Dictyoglomus thermoph... [more]
RT16_PONAB5.888e-1747.5028S ribosomal protein S16, mitochondrial OS=Pongo ... [more]
RT16_HUMAN5.888e-1747.5028S ribosomal protein S16, mitochondrial OS=Homo s... [more]
RS16_STRS75.888e-1751.8130S ribosomal protein S16 OS=Streptococcus equi su... [more]
RS16_STRGC5.888e-1753.0130S ribosomal protein S16 OS=Streptococcus gordoni... [more]
RS16_STRE45.888e-1751.8130S ribosomal protein S16 OS=Streptococcus equi su... [more]
RS16_STRA55.888e-1750.6030S ribosomal protein S16 OS=Streptococcus agalact... [more]
RS16_STRA35.888e-1750.6030S ribosomal protein S16 OS=Streptococcus agalact... [more]
RS16_STRA15.888e-1750.6030S ribosomal protein S16 OS=Streptococcus agalact... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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