FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMH_DANRE (Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.501e-54
Identity = 104/158 (65.82%), Postives = 125/158 (79.11%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS  NF IGG  ERMP  ++RAFGILKK AA+VN +YGLDP I  AIM+AA EV  GKL+DHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG K G K  VHPNDHVN+SQSSNDTFPT MHIAAA E +  L+P L+ LH++L +K+ +F+  +K+
Sbjct:   73 RSTMNFRIGGVTERMPIQVIRAFGILKKAAAEVNKDYGLDPKIADAIMKAADEVESGKLDDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKSQSSNDTFPTAMHIAAAKEVHEVLLPGLQTLHDALAAKAEQFKDIIKI 230          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMH_CAEEL (Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.003e-53
Identity = 104/158 (65.82%), Postives = 121/158 (76.58%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS  NF IGG  ERMP P++ AFGILKK AA VN E+GLD  +  AI QAA EV +GKL++HFPLV WQTGSGTQSNMN NEVI+NRA EILG + G +K VHPNDHVN SQSSNDTFPT MHIA   E NSRL+P LK L  +LH+K+ EF+  +K+
Sbjct:   65 RSQMNFKIGGPEERMPIPVIHAFGILKKAAALVNTEFGLDKKLADAISQAADEVVDGKLDEHFPLVTWQTGSGTQSNMNVNEVISNRAIEILGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAVGREVNSRLLPALKKLRTALHNKAEEFKDIIKI 222          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMH_DICDI (Fumarate hydratase, mitochondrial OS=Dictyostelium discoideum GN=fumH PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.226e-51
Identity = 101/159 (63.52%), Postives = 126/159 (79.25%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR--GEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL+NFDIGGE E+MP  +VR+FGILK+CAA VN +YGLD  I   I +AA EV EGKL+D FPLVV+QTGSGTQSNMNANEVI+NRA E++  KR   +K+VHPNDHVN+SQSSNDTFPT MHIAAA+  N +L+P L++L  ++ +K  EF   +K+
Sbjct:   47 RSLENFDIGGESEKMPLMVVRSFGILKRCAAIVNKKYGLDATIADNIAKAATEVVEGKLDDQFPLVVFQTGSGTQSNMNANEVISNRAIELMTGKRDFSKKLVHPNDHVNKSQSSNDTFPTCMHIAAAISINEKLVPALEMLLAAMRTKQNEFNHIIKI 205          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_RHILO (Fumarate hydratase class II OS=Rhizobium loti GN=fumC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 8.221e-48
Identity = 101/159 (63.52%), Postives = 120/159 (75.47%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF IG E++  P  IVRA G++K+ AA+VNME   LDP +GKAI+ AAQEV +GKLNDHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG   G +K VHPNDHVN SQSSNDT+PT MHIA A +    LIP L  LH +L +K+  F   +K+
Sbjct:   30 RSLGNFKIGWEKQ--PASIVRALGVVKRAAAEVNMEMKRLDPVVGKAIVDAAQEVIDGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAEQVVHHLIPALHHLHKALDAKARAFNHIIKI 186          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_CAUCR (Fumarate hydratase class II OS=Caulobacter crescentus GN=fumC PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.831e-47
Identity = 99/159 (62.26%), Postives = 121/159 (76.10%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF IG E++  P P+VRA GI+K+ AA+ N+  G LDP I + I+ AA EV EGKLNDHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K VHPNDHVN SQSSNDTFPT MHIA A +    L+P LK LH +L +K+ E++  +K+
Sbjct:   28 RSLGNFKIGWEKQ--PLPVVRALGIVKRAAAEANLALGKLDPKIAETIIAAANEVIEGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGEMGSKKPVHPNDHVNMSQSSNDTFPTAMHIACAEQVVHDLLPALKHLHKALAAKAAEWKDIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BRUSU (Fumarate hydratase class II OS=Brucella suis GN=fumC PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.124e-47
Identity = 98/159 (61.64%), Postives = 121/159 (76.10%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSLQNF IGGER  MP P+V A G++K+ AA+ N+  G LDP +G+ I  AA EV EGKL+DHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K +HPNDHVN SQSSND+FPT +HIA A+ET +RL P L+ L  +L  K   F+  +K+
Sbjct:   28 RSLQNFRIGGER--MPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BRUME (Fumarate hydratase class II OS=Brucella melitensis GN=fumC PE=3 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 3.124e-47
Identity = 98/159 (61.64%), Postives = 121/159 (76.10%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSLQNF IGGER  MP P+V A G++K+ AA+ N+  G LDP +G+ I  AA EV EGKL+DHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K +HPNDHVN SQSSND+FPT +HIA A+ET +RL P L+ L  +L  K   F+  +K+
Sbjct:   28 RSLQNFRIGGER--MPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_THET2 (Fumarate hydratase class II OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=fumC PE=3 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.187e-46
Identity = 95/158 (60.13%), Postives = 119/158 (75.32%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL+NF IG +R RMP  I+RA+G+LKK AA+ N+E G L   I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG   G K VHPNDHVNR QSSNDTFPT M++A A+  + RL P ++ L  +  +K+  F   VK+
Sbjct:   27 RSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYVHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKV 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_AGRT5 (Fumarate hydratase class II OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=fumC PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.550e-46
Identity = 97/159 (61.01%), Postives = 119/159 (74.84%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY-GLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF IG E++  P  +VRA GI+K+ AA+ NM   GLDP +G AI+ AAQEV +GKL +HFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K VHPNDHVN SQSSNDT+PT MHIA   E    L+P LK LH +L +K  +F+  +K+
Sbjct:   28 RSLGNFKIGWEKQ--PASVVRALGIVKQAAARANMALAGLDPKVGDAIIAAAQEVIDGKLTEHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGEMGTKKPVHPNDHVNMSQSSNDTYPTAMHIACVEEIVHHLLPALKHLHTALEAKVKQFEKIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_RHIME (Fumarate hydratase class II OS=Rhizobium meliloti GN=fumC PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 3.454e-46
Identity = 99/159 (62.26%), Postives = 118/159 (74.21%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF IG E++  P  IVRA GI+K+ AA+ NM  G LDPAIG AI++AAQEV +GKL++HFPLVVWQTGSGTQSNMNANEV++NRA E+LG   G +K VHPNDHVN SQSSNDT+PT MHIA A      L+P LK LH +L  K   F   +K+
Sbjct:   28 RSLGNFKIGWEKQ--PLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKI 184          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMH_DANRE4.501e-5465.82Fumarate hydratase, mitochondrial OS=Danio rerio G... [more]
FUMH_CAEEL1.003e-5365.82Probable fumarate hydratase, mitochondrial OS=Caen... [more]
FUMH_DICDI1.226e-5163.52Fumarate hydratase, mitochondrial OS=Dictyostelium... [more]
FUMC_RHILO8.221e-4863.52Fumarate hydratase class II OS=Rhizobium loti GN=f... [more]
FUMC_CAUCR1.831e-4762.26Fumarate hydratase class II OS=Caulobacter crescen... [more]
FUMC_BRUSU3.124e-4761.64Fumarate hydratase class II OS=Brucella suis GN=fu... [more]
FUMC_BRUME3.124e-4761.64Fumarate hydratase class II OS=Brucella melitensis... [more]
FUMC_THET21.187e-4660.13Fumarate hydratase class II OS=Thermus thermophilu... [more]
FUMC_AGRT51.550e-4661.01Fumarate hydratase class II OS=Agrobacterium tumef... [more]
FUMC_RHIME3.454e-4662.26Fumarate hydratase class II OS=Rhizobium meliloti ... [more]

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Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
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