FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_METEA (Fumarate hydratase class II OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=fumC PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.695e-46
Identity = 99/159 (62.26%), Postives = 115/159 (72.33%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS+QNF IG ER+  P P+V A GI+K+ AA VN + G LDP I  AI ++A EV  GK +D FPLVVWQTGSGTQSNMNANEVIA+ A E LG KRG K  VHPNDH NR QSSNDTFPT MHIA A E   RL+P L  LH +L +K+ EF+  VK+
Sbjct:   35 RSIQNFKIGTERQ--PAPLVHALGIVKQAAALVNKDLGGLDPKIADAIAESAAEVVAGKHDDEFPLVVWQTGSGTQSNMNANEVIASLANERLGGKRGGKSPVHPNDHCNRGQSSNDTFPTAMHIAVAREVQERLLPALSHLHTALDAKAKEFESIVKI 191          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_THEAQ (Fumarate hydratase class II OS=Thermus aquaticus GN=fumC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.924e-45
Identity = 93/158 (58.86%), Postives = 116/158 (73.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F IG  R RMP  I+RA+G+LKK AA+ N+E G L   I +AI+QAA+EV  GKL+DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG   G K VHPNDHVNR QSSNDTFPT M++A  +  +  L P ++ L  +   K+  F G VK+
Sbjct:   27 RSLEHFRIGAWRFRMPLEIIRAYGMLKKAAARANLELGELPEEIARAIIQAAEEVIAGKLDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYVHPNDHVNRGQSSNDTFPTAMYVATVLALHQHLYPAVEGLIATFEEKARAFDGIVKV 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BORPA (Fumarate hydratase class II OS=Bordetella parapertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.988e-45
Identity = 97/159 (61.01%), Postives = 114/159 (71.70%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL  F I    E+MP P+V A   LK+ AAKVN E G LDP +  AIM+AA EV  GK  D FPL VWQTGSGTQSNMN NEV+ANRA+E+LG +RGE + VHPNDHVNR QSSNDTFPT MH+AAA+E   R++P LK L  +L +KS  F   VK+
Sbjct:   27 RSLHFFAIS--TEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVVAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKI 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BORBR (Fumarate hydratase class II OS=Bordetella bronchiseptica GN=fumC PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.988e-45
Identity = 97/159 (61.01%), Postives = 114/159 (71.70%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL  F I    E+MP P+V A   LK+ AAKVN E G LDP +  AIM+AA EV  GK  D FPL VWQTGSGTQSNMN NEV+ANRA+E+LG +RGE + VHPNDHVNR QSSNDTFPT MH+AAA+E   R++P LK L  +L +KS  F   VK+
Sbjct:   27 RSLHFFAIS--TEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVVAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKI 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BORPE (Fumarate hydratase class II OS=Bordetella pertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 6.514e-45
Identity = 97/159 (61.01%), Postives = 114/159 (71.70%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL  F I    E+MP P+V A   LK+ AAKVN E G LDP +  AIM+AA EV  GK  D FPL VWQTGSGTQSNMN NEV+ANRA+E+LG +RGE + VHPNDHVNR QSSNDTFPT MH+AAA+E   R++P LK L  +L +KS  F   VK+
Sbjct:   27 RSLHFFAIS--TEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKI 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_COXBU (Fumarate hydratase class II OS=Coxiella burnetii GN=fumC PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 2.096e-43
Identity = 93/159 (58.49%), Postives = 111/159 (69.81%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF IG  RE MP  ++RAFG+LKK A   N+E G +       I++A +E+  GKLNDHFPL +WQTGSGTQ+NMN NEVI+NRA E+ G K G K  VHPNDHVN SQSSNDTFPT MHI AA     +LIPNL VL ++L  KS EF   +K+
Sbjct:   25 RSLINFAIG--RETMPPELIRAFGVLKKAAVLTNVELGKVSQEKANFILKACEELIAGKLNDHFPLKIWQTGSGTQTNMNVNEVISNRAIELAGGKLGSKEPVHPNDHVNMSQSSNDTFPTAMHITAAEMITHQLIPNLTVLRDTLEKKSKEFSEIIKI 181          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_DEIRA (Fumarate hydratase class II OS=Deinococcus radiodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 3.952e-42
Identity = 90/159 (56.60%), Postives = 115/159 (72.33%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS+ NF IG +      P++RA GILKK AA+ N E G  PA +   I++AA EV  GKL++HFPLVV+QTGSGTQSNMNANEVI+NRA E+ G + G +K VHPNDHVNR QSSNDTFPT MHIA  +E N RL   +  L ++LH+K+ +++  VK+
Sbjct:   28 RSIHNFPIGRDTFVWGRPVIRALGILKKGAAQANAELGELPADVADLIVKAADEVIAGKLDEHFPLVVFQTGSGTQSNMNANEVISNRAIELAGGEMGSKKPVHPNDHVNRGQSSNDTFPTAMHIAVVLELNERLYGAVGKLRDTLHAKAEQYKDLVKV 186          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_RICBR (Fumarate hydratase class II OS=Rickettsia bellii (strain RML369-C) GN=fumC PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.741e-42
Identity = 86/159 (54.09%), Postives = 116/159 (72.96%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA-AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL+NF IG  ++RMPE ++R+  ILKKCAAKVN+E+G L+P I ++I +A   +   + +D+FPLVVWQTGSGTQ+NMN NEVIA+ A  E+ G K G+  VHPNDHVN+ QSSND+FPT MHIA  + T  +LIP L  L  +L +KS ++   +K+
Sbjct:   28 RSLENFKIG--KQRMPEILIRSLAILKKCAAKVNLEFGDLEPKIAESIDKATSRILNAEFSDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGMKGGKSPVHPNDHVNKGQSSNDSFPTAMHIATVLATREKLIPALNNLLTALQNKSKDWDSIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIN (Fumarate hydratase class II OS=Leptospira interrogans GN=fumC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.804e-42
Identity = 92/159 (57.86%), Postives = 113/159 (71.07%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL +F IG +R   P  ++RA GILKK AA VN E GL      K I+QAA EV  GKL++HFPL VWQTGSGTQ+NMN+NEVI+NRA EI G  +G +K +HPND VN++QSSNDTFPT MHIAAA + N +LIP L  L  +   K+ EFQ  +K+
Sbjct:   27 RSLHHFHIGNDR--FPREMIRALGILKKSAAVVNAELGLLSEDKKKLIVQAADEVISGKLDEHFPLSVWQTGSGTQTNMNSNEVISNRAIEIAGGVKGSKKPIHPNDDVNKAQSSNDTFPTAMHIAAAEQLNQKLIPALIQLKETFKKKTDEFQNIIKI 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIC (Fumarate hydratase class II OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=fumC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.804e-42
Identity = 92/159 (57.86%), Postives = 113/159 (71.07%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL +F IG +R   P  ++RA GILKK AA VN E GL      K I+QAA EV  GKL++HFPL VWQTGSGTQ+NMN+NEVI+NRA EI G  +G +K +HPND VN++QSSNDTFPT MHIAAA + N +LIP L  L  +   K+ EFQ  +K+
Sbjct:   27 RSLHHFHIGNDR--FPREMIRALGILKKSAAVVNAELGLLSEDKKKLIVQAADEVISGKLDEHFPLSVWQTGSGTQTNMNSNEVISNRAIEIAGGVKGSKKPIHPNDDVNKAQSSNDTFPTAMHIAAAEQLNQKLIPALIQLKETFKKKTDEFQNIIKI 183          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_METEA7.695e-4662.26Fumarate hydratase class II OS=Methylobacterium ex... [more]
FUMC_THEAQ2.924e-4558.86Fumarate hydratase class II OS=Thermus aquaticus G... [more]
FUMC_BORPA4.988e-4561.01Fumarate hydratase class II OS=Bordetella parapert... [more]
FUMC_BORBR4.988e-4561.01Fumarate hydratase class II OS=Bordetella bronchis... [more]
FUMC_BORPE6.514e-4561.01Fumarate hydratase class II OS=Bordetella pertussi... [more]
FUMC_COXBU2.096e-4358.49Fumarate hydratase class II OS=Coxiella burnetii G... [more]
FUMC_DEIRA3.952e-4256.60Fumarate hydratase class II OS=Deinococcus radiodu... [more]
FUMC_RICBR6.741e-4254.09Fumarate hydratase class II OS=Rickettsia bellii (... [more]
FUMC_LEPIN8.804e-4257.86Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMC_LEPIC8.804e-4257.86Fumarate hydratase class II OS=Leptospira interrog... [more]

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Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
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