FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_NITEU (Fumarate hydratase class II OS=Nitrosomonas europaea GN=fumC PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.150e-41
Identity = 91/159 (57.23%), Postives = 111/159 (69.81%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF+I GER  MP  ++ A  ++K+ AA VN + GL D  I +AI+ AA EV  G+    FPLVVWQTGSGTQ+NMN NEV+ANRA+EILG  RG+ + VHPNDHVN+ QSSND FPT MHIAA     +RLIP L+ L  +L SKS  F   VK+
Sbjct:   28 RSLNNFNISGER--MPSALIHALALVKRAAASVNHDLGLLDENIARAIITAADEVLAGEHAGEFPLVVWQTGSGTQTNMNMNEVLANRASEILGGTRGKGRKVHPNDHVNKGQSSNDVFPTAMHIAAVEAIRNRLIPALEALRKTLSSKSAAFSDIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC1_BRAJA (Fumarate hydratase class II 1 OS=Bradyrhizobium japonicum GN=fumC1 PE=3 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 2.562e-41
Identity = 94/159 (59.12%), Postives = 112/159 (70.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS QNF IG   +RMP  +V A GI+K  AA+ N E GL D     AI++AA+EV +G L+DHFPLVVWQTGSGTQ+NMN NEVIANRA E+LG + G +K VHPNDHVN SQSSND+FPT MHIAAA    + L+P L  L  +L  K  EF   VK+
Sbjct:   38 RSRQNFRIG--TDRMPISLVHALGIVKLAAAQSNRELGLLDQRRASAIIRAAREVIDGSLDDHFPLVVWQTGSGTQTNMNLNEVIANRANELLGGELGAKKPVHPNDHVNMSQSSNDSFPTAMHIAAASRITADLVPALGELLRALRKKEKEFAKIVKI 194          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_RALSO (Fumarate hydratase class II OS=Ralstonia solanacearum GN=fumC PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.346e-41
Identity = 87/159 (54.72%), Postives = 111/159 (69.81%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSLQNFDI G+R  MP  ++ A   +K+ +A VN   GL PA    A++ AA EV  GK    FPLVVWQTGSGTQSNMN NEV+ANRA+E+LG +RGE ++VHPND VNRSQSSND FPT MH+AA       L+P+L+ L  +L  K+++F   +K+
Sbjct:   27 RSLQNFDIAGDR--MPRELIDALARIKRASAAVNQRLGLLPADKANAVIAAADEVIAGKHPGEFPLVVWQTGSGTQSNMNMNEVLANRASELLGGERGEARLVHPNDDVNRSQSSNDVFPTAMHVAAVTAITRHLLPSLRALRETLARKAIDFDDIIKI 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_RICFE (Fumarate hydratase class II OS=Rickettsia felis GN=fumC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 7.453e-41
Identity = 88/159 (55.35%), Postives = 113/159 (71.07%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL+NF IG  +++MPE ++RA  ILKKCAA+VN E+G L+  I  +I +A   + EG+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A E L  K+G K  VHPNDHVN+ QSSND+FPT MHIA  + T  +LIP L  L  SL  KS ++   +K+
Sbjct:   28 RSLENFKIG--KQKMPEILIRALAILKKCAAQVNYEFGDLEAKIATSIDKATDRILEGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTSKKGGKSPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTSLQDKSKDWDKIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_RICCN (Fumarate hydratase class II OS=Rickettsia conorii GN=fumC PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.660e-40
Identity = 86/159 (54.09%), Postives = 113/159 (71.07%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA-AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL+NF IG  +++MPE ++RA  ILKKCAA+VN E+G L+  I  +I +A   + EG+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A  E+ G K G+  VHPNDHVN+ QSSND+FPT MHIA  + T  +LIP L  +  SL  KS ++   +K+
Sbjct:   28 RSLENFKIG--KQKMPEILIRALAILKKCAAQVNHEFGDLEAKIAISIDKATDRILEGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKSPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNILTSLQDKSKDWDKIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC2_PSEAE (Fumarate hydratase class II 2 OS=Pseudomonas aeruginosa GN=fumC2 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.832e-40
Identity = 87/158 (55.06%), Postives = 109/158 (68.99%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            RSL+NF IGG+R  MP  ++ A  ++KK AA+VN   G L P + + I QAA EV  G+ ++HFPLVVWQTGSGTQ+NMN NEVIA RA E+ G+ RG K  VHPNDHVNR+QSSND+FPT MHIAAA   + +L+P +  L   L  +S      VK
Sbjct:   26 RSLENFAIGGQR--MPLAVIHALALIKKAAARVNDHLGELPPEVARLIEQAADEVLAGRHDEHFPLVVWQTGSGTQTNMNVNEVIAGRANELAGNPRGGKSPVHPNDHVNRAQSSNDSFPTAMHIAAAKAVHEQLLPAIAELSGGLAEQSARHASLVK 181          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_PHOLL (Fumarate hydratase class II OS=Photorhabdus luminescens subsp. laumondii GN=fumC PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.831e-40
Identity = 85/159 (53.46%), Postives = 113/159 (71.07%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F I   +E+MP  ++ A  + K+ AA VNM+ GL P   G+AI+ AA+EV EGK    FPL +WQTGSGTQSNMN NEV+ANR +EILG  RG E+++HPND VN+SQSSND FPT MH+AA +  +  LIP LK+L  +L  K+  ++  VK+
Sbjct:   28 RSLEHFRIS--QEKMPVALIHALALTKQAAASVNMDLGLLPQERGEAIIAAAKEVLEGKHPTEFPLAIWQTGSGTQSNMNMNEVLANRGSEILGGVRGSERLIHPNDDVNKSQSSNDVFPTAMHVAAVIALSEHLIPELKILQKTLADKAEAYKDIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_YERPE (Fumarate hydratase class II OS=Yersinia pestis GN=fumC PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.240e-40
Identity = 85/159 (53.46%), Postives = 112/159 (70.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL +F I   +E+MP  ++ A  + K+ AA+VNM+ GL PA   KAIM+AA EV +G     FPL +WQTGSGTQ+NMN NEV+ANRA+E+LG  RG  ++VHPND VN+SQSSND FPT MH+AA M  +  L+P LKVL  +L  K+  ++  VK+
Sbjct:   28 RSLAHFRIS--QEKMPTELIHALALTKRAAAQVNMDLGLLPAERAKAIMRAADEVLDGAHPTEFPLAIWQTGSGTQTNMNMNEVLANRASELLGGARGNNRLVHPNDDVNKSQSSNDVFPTAMHVAAVMGVSEHLLPELKVLQKTLADKAEAYRDIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_CAMJE (Fumarate hydratase class II OS=Campylobacter jejuni GN=fumC PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.406e-39
Identity = 89/159 (55.97%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK-RGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF IG E+  MP+ ++ AF  LKK  A VN + G LD A   AI+QA  E+  GK +D+FPL +WQTGSGTQSNMN NEVIANRA EI+G   R EK+VHPNDHVN SQSSNDTFPT M I A  +   +LIP L  L  +   K  EF G +K+
Sbjct:   27 RSFENFKIGCEK--MPKVLIYAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSNMNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLIPALDELIATFEKKVKEFDGIIKI 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_SYNY3 (Fumarate hydratase class II OS=Synechocystis sp. (strain PCC 6803) GN=fumC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.341e-39
Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL  FDIG +   MP  ++RAF ILKK AA  N + G  PA   + I+ AA E+  G+  DHFPL +WQTGSGTQ+NMN NEVIANRA  I G + G K  +HPNDHVN SQSSNDTFPT MHIAA     ++LIP+L+ L +SL+ K+  F G  K+
Sbjct:   29 RSLMFFDIGSDV--MPPDLIRAFAILKKAAAITNQDLGKLPADKAELIITAADEIIAGQWLDHFPLRIWQTGSGTQTNMNVNEVIANRAIAICGGELGSKNPIHPNDHVNMSQSSNDTFPTAMHIAAVAGLQTKLIPSLQALRDSLNEKAECFAGITKI 185          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_NITEU1.150e-4157.23Fumarate hydratase class II OS=Nitrosomonas europa... [more]
FUMC1_BRAJA2.562e-4159.12Fumarate hydratase class II 1 OS=Bradyrhizobium ja... [more]
FUMC_RALSO3.346e-4154.72Fumarate hydratase class II OS=Ralstonia solanacea... [more]
FUMC_RICFE7.453e-4155.35Fumarate hydratase class II OS=Rickettsia felis GN... [more]
FUMC_RICCN1.660e-4054.09Fumarate hydratase class II OS=Rickettsia conorii ... [more]
FUMC2_PSEAE2.832e-4055.06Fumarate hydratase class II 2 OS=Pseudomonas aerug... [more]
FUMC_PHOLL4.831e-4053.46Fumarate hydratase class II OS=Photorhabdus lumine... [more]
FUMC_YERPE8.240e-4053.46Fumarate hydratase class II OS=Yersinia pestis GN=... [more]
FUMC_CAMJE1.406e-3955.97Fumarate hydratase class II OS=Campylobacter jejun... [more]
FUMC_SYNY35.341e-3955.35Fumarate hydratase class II OS=Synechocystis sp. (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
back to top