FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_SALTY (Fumarate hydratase class II OS=Salmonella typhimurium GN=fumC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 6.976e-39
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL  A    AI+QAA EV  GK  D FPL +WQTGSGTQSNMN NEV+ANRA+EILG  RG E+ VHPND VN+SQSSND FPT MH+AA +     LIP L  L ++L  KS  F   VK+
Sbjct:   28 RSLEHFRIS--TEKMPVSLIHALALTKRAAAKVNQDLGLLAAEKASAIIQAADEVLAGKHADEFPLAIWQTGSGTQSNMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALREHLIPQLSALTDTLRDKSHAFADIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BACSU (Fumarate hydratase class II OS=Bacillus subtilis GN=fumC PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 6.976e-39
Identity = 82/158 (51.90%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF IG E+  MP  +V+AF ILK+  A  N   G LD    +AI     +V +GK +D+FPLVVWQTGSGTQSNMN NEV+ANRA  +L  K  ++ +HPND VNRSQSSNDTFPT MH+AA +    +L+P L  L N+L  K+  +   VK+
Sbjct:   27 RSKENFKIGSEK--MPMRVVKAFAILKRSTALANKRLGNLDAEKAEAIAAVCDDVLKGKYDDNFPLVVWQTGSGTQSNMNMNEVVANRATALLKEKNSDQTIHPNDDVNRSQSSNDTFPTAMHVAAVLAVYEQLVPALDQLRNTLDEKAKAYNDIVKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BACHD (Fumarate hydratase class II OS=Bacillus halodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 6.976e-39
Identity = 85/158 (53.80%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF IG   E+MP  I+ AF +LKK AA VN + G L      AI  AA EV  GK +DHFPL VWQTGSGTQSNMN NEV+A R  ++L  K  +  +HPND VNRSQSSNDTFPT MHIAA  + +  L+P L++   +LH K+ +F   +KL
Sbjct:   27 RSYENFHIG--TEKMPMEIIYAFALLKKAAANVNKKLGQLSAEKADAITWAANEVLAGKHDDHFPLFVWQTGSGTQSNMNMNEVLARRGNQLLQEKGLDVTIHPNDDVNRSQSSNDTFPTAMHIAAYNKLDDHLLPTLQMFKQTLHQKAKQFDDVIKL 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_ECOLI (Fumarate hydratase class II OS=Escherichia coli (strain K12) GN=fumC PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 9.111e-39
Identity = 86/159 (54.09%), Postives = 108/159 (67.92%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA +    +LIP LK L  +L+ KS  F   VK+
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_SALTI (Fumarate hydratase class II OS=Salmonella typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.554e-38
Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL  A    AI++AA EV  GK  D FPL +WQTGSGTQSNMN NEV+ANRA+EILG  RG E+ VHPND VN+SQSSND FPT MH+AA +     LIP L  L ++L  KS  F   VK+
Sbjct:   28 RSLEHFRIS--TEKMPVSLIHALALTKRAAAKVNQDLGLLAAEKASAIIEAADEVLAGKHADEFPLAIWQTGSGTQSNMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALREHLIPQLSALTDTLRDKSHAFADIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_PSEPK (Fumarate hydratase class II OS=Pseudomonas putida (strain KT2440) GN=fumC-2 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.554e-38
Identity = 90/158 (56.96%), Postives = 107/158 (67.72%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            RSL NF IG  +ERMP  ++ A  ++KK AA+VN   G  PA I + I QAA EV +G+ +D FPLVVWQTGSGTQSNMN NEVIA RA E+ G  RG K  VHPNDHVNRSQSSND FPT MHIAAA   + +L+P +  L + L   S+     VK
Sbjct:   26 RSLINFAIG--KERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGKGRGGKAPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEKLLPAVTELSSGLAELSMRHHKLVK 181          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_ECOL6 (Fumarate hydratase class II OS=Escherichia coli O6 GN=fumC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.554e-38
Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA +    +LIP LK L  +L  KS  F   VK+
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLSEKSRAFADIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_ECO57 (Fumarate hydratase class II OS=Escherichia coli O157:H7 GN=fumC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.554e-38
Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA +    +LIP LK L  +L  KS  F   VK+
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLSEKSRAFADIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_THEEB (Fumarate hydratase class II OS=Thermosynechococcus elongatus (strain BP-1) GN=fumC PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.462e-38
Identity = 84/159 (52.83%), Postives = 105/159 (66.04%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F IG +R  MP  ++ A   LKK AA  N + G LDP   K I+QAA EV  G+ +D FPL +WQTGSGTQ+NMN NEVIANRA E+ G  +G K  +HPNDHVN SQSSNDTFPT MH+A  +    RL+P L+ L   L  K+  F   +K+
Sbjct:   29 RSLKHFAIGSQR--MPLAVIHAMARLKKAAAIANRDLGVLDPEKAKWIIQAADEVIAGQWDDQFPLAIWQTGSGTQTNMNVNEVIANRAIELAGGVKGSKSPIHPNDHVNCSQSSNDTFPTAMHVATVLALQERLLPTLRHLLTVLQEKAAAFAEIIKI 185          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_NEIMA (Fumarate hydratase class II OS=Neisseria meningitidis serogroup A GN=fumC PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.522e-38
Identity = 84/159 (52.83%), Postives = 106/159 (66.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG-HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS  NF IGGE   +P+P++ A  ++KK AA  N+  G + P     I QAA +V  GKL+  FPLVVWQTGSGTQSNMN NEV+ANRA EI G      + VHPNDHVN +QS+ND FPT +H+AAA+E N  LIP +K L ++L  K+  F   VK+
Sbjct:   27 RSRNNFKIGGET--LPQPLIYALALVKKAAAATNVSLGRIKPEQADLITQAADDVLNGKLDGQFPLVVWQTGSGTQSNMNMNEVLANRANEIAGTGLAAYQPVHPNDHVNHAQSTNDAFPTAIHVAAAIEINRHLIPAVKALRDTLDKKAQAFAPIVKI 183          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_SALTY6.976e-3955.35Fumarate hydratase class II OS=Salmonella typhimur... [more]
FUMC_BACSU6.976e-3951.90Fumarate hydratase class II OS=Bacillus subtilis G... [more]
FUMC_BACHD6.976e-3953.80Fumarate hydratase class II OS=Bacillus halodurans... [more]
FUMC_ECOLI9.111e-3954.09Fumarate hydratase class II OS=Escherichia coli (s... [more]
FUMC_SALTI1.554e-3854.72Fumarate hydratase class II OS=Salmonella typhi GN... [more]
FUMC_PSEPK1.554e-3856.96Fumarate hydratase class II OS=Pseudomonas putida ... [more]
FUMC_ECOL61.554e-3854.09Fumarate hydratase class II OS=Escherichia coli O6... [more]
FUMC_ECO571.554e-3854.09Fumarate hydratase class II OS=Escherichia coli O1... [more]
FUMC_THEEB3.462e-3852.83Fumarate hydratase class II OS=Thermosynechococcus... [more]
FUMC_NEIMA4.522e-3852.83Fumarate hydratase class II OS=Neisseria meningiti... [more]

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Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
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