FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_RICPR (Fumarate hydratase class II OS=Rickettsia prowazekii GN=fumC PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 7.713e-38
Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF I   +++MP+ ++RA  ILKKCAA+VN E+G L+  I  +I +A   +  G+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A E L  K+G K  VHPNDHVN+ QSSND+FPT MHIA  + T  +LIP L  L   L  KS ++   +K+
Sbjct:   28 RSLNNFKIS--KQKMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_SHIFL (Fumarate hydratase class II OS=Shigella flexneri GN=fumC PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.007e-37
Identity = 85/159 (53.46%), Postives = 106/159 (66.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F I    E+MP  ++ A  + K+ AAKVN +  L       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA +    +LIP LK L  +L  KS  F   VK+
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLDLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLSEKSRAFADIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BACCR (Fumarate hydratase class II OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=fumC PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.007e-37
Identity = 83/158 (52.53%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF IG   E+MP  IV+AF ILKK AA  N + G L     +AI++AA EV  GK N+HFPLVVWQTGSGTQSNMN NEVIANR  +IL  K  +  +HPND VN SQSSNDTFPT +H+A  +   + ++P +  L  +L  K   F+  +K+
Sbjct:   27 RSKENFPIG--TEQMPLEIVKAFAILKKSAALSNQKLGKLSEEKAEAIVEAADEVIAGKWNEHFPLVVWQTGSGTQSNMNVNEVIANRGNQILKEKGSDVHIHPNDDVNMSQSSNDTFPTALHVACVIAVENHVLPAITKLKETLVEKVTAFEHIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_RICTY (Fumarate hydratase class II OS=Rickettsia typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.244e-37
Identity = 82/159 (51.57%), Postives = 108/159 (67.92%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA-AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF I   +++MP+ ++ A  ILKKCAA+VN E+G L+  I  +I +A   +  G+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A  E+ G K G+  VHPNDHVN+ QSSND+FPT MHIA  + T  +LIP L  L   L  KS ++   +K+
Sbjct:   28 RSLNNFKIS--KQKMPKILIHALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKSPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BACAN (Fumarate hydratase class II OS=Bacillus anthracis GN=fumC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.244e-37
Identity = 82/158 (51.90%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF IG   E+MP  IV+AF ILKK AA  N + G L     +AI+ AA E+  GK N+HFPLVVWQTGSGTQSNMN NEVIANR  +IL  K  +  +HPND VN SQSSNDTFPT +H+A  +   + ++P +  L  +L  K   F+  +K+
Sbjct:   27 RSKENFPIG--TEQMPLEIVKAFAILKKSAALSNQKLGKLSEEKAEAIVVAADEIIAGKWNEHFPLVVWQTGSGTQSNMNVNEVIANRGNQILKEKGSDVHIHPNDDVNMSQSSNDTFPTALHVACVLAVENHVLPAITKLKETLAEKVTAFEHIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_WIGBR (Fumarate hydratase class II OS=Wigglesworthia glossinidia brevipalpis GN=fumC PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.828e-37
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS+ NF+I    E+MP  ++ A   +K  AAKVN +  L +     AI++A++E+  GK  D FPLV+WQTGSGTQ+NMN NEVIAN A ++LG K G+  I+HPNDHVN+SQSSND FPT MHI+A +     L+PNL  L  S + KS+ F+  +K+
Sbjct:   28 RSIYNFNIS--TEKMPYELIHALVQIKLVAAKVNKDLKLLEEKKADAIIKASEEILSGKYKDSFPLVIWQTGSGTQTNMNVNEVIANIAIKLLGGKYGDYSIIHPNDHVNKSQSSNDVFPTAMHISAVLSLKKNLLPNLIKLKKSFYDKSILFKDIIKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_MYXXD (Fumarate hydratase class II OS=Myxococcus xanthus (strain DK 1622) GN=fumC PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.828e-37
Identity = 85/159 (53.46%), Postives = 109/159 (68.55%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSLQNF I    ERMP  ++RA  ++KK AA+VN+E G L    G+AI++AA EV  G+ +  FPL VWQTGSGTQ+NMN NEV+ANRA+E+LG +RGE + VHPND VN+ QSSND FPT M +AA       ++P LK L + L  K+  F   VK+
Sbjct:   30 RSLQNFAIS--TERMPLALIRALVLVKKAAARVNVENGSLAKEKGEAIIRAADEVLAGQHDAEFPLSVWQTGSGTQTNMNTNEVLANRASELLGGERGERRKVHPNDDVNKGQSSNDVFPTAMSVAAVAAITEHVLPELKALRDVLAQKARAFHDVVKV 186          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC2_BRAJA (Fumarate hydratase class II 2 OS=Bradyrhizobium japonicum GN=fumC2 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.900e-36
Identity = 79/159 (49.69%), Postives = 108/159 (67.92%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL++F IG  R+ MP  +++++ ILKK AA  N   G LD  I K I+    E+  G+ +D FPL VW TGSGTQ NMN NEVI+NR  ++ G   G K+ VHPNDHVN SQSSND+FP+ M+IAAAM    RL+P ++ LH+++ +KS ++   VK+
Sbjct:   28 RSLEHFSIG--RDLMPREMIQSYAILKKAAANANYAGGRLDGKIHKLIVHTCDEILAGQHHDMFPLHVWMTGSGTQFNMNVNEVISNRCCQLAGTALGSKLPVHPNDHVNMSQSSNDSFPSAMYIAAAMNVTQRLVPAVEALHDAIAAKSNQWDDIVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_PASMU (Fumarate hydratase class II OS=Pasteurella multocida GN=fumC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.240e-36
Identity = 85/159 (53.46%), Postives = 105/159 (66.04%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGK-AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS  NF IG E   MP+ I+ AFG LKK AA  N + G+ P   +  I QA  E+   KL+D FPLV+WQTGSGTQSNMN NEVI+NRA  + G K GEK I+HPND VN+SQSSNDT+PT MHIAA  +     IP ++ L  +L  K+  F+  VK+
Sbjct:   27 RSRNNFKIGPEAS-MPKEIIEAFGYLKKAAAYANHDLGVLPVEKRDLIAQACDEILANKLDDQFPLVIWQTGSGTQSNMNLNEVISNRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEVTIPCVERLQKTLAQKADAFKDVVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_METAC (Fumarate hydratase class II OS=Methanosarcina acetivorans GN=fumC PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.240e-36
Identity = 84/159 (52.83%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL +F IG +   MP+ +  A+G +KK AA VN   G+ P    + I + A EV  GKL+  FPL VWQTGSGTQSNMN NEVI+NRA +++G   G K  VHPND VN SQSSNDTFPT MHIA  +E ++RLIP + VL  S+ +K+ E+   VK+
Sbjct:   40 RSLIHFSIGDDY--MPKEVYHAYGYVKKAAALVNEAAGIIPPWKAELIARVADEVIAGKLDSEFPLYVWQTGSGTQSNMNVNEVISNRAIQLVGGSLGSKHPVHPNDDVNMSQSSNDTFPTAMHIATVLEFSNRLIPAVTVLEESIWAKAREWVDIVKI 196          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_RICPR7.713e-3852.83Fumarate hydratase class II OS=Rickettsia prowazek... [more]
FUMC_SHIFL1.007e-3753.46Fumarate hydratase class II OS=Shigella flexneri G... [more]
FUMC_BACCR1.007e-3752.53Fumarate hydratase class II OS=Bacillus cereus (st... [more]
FUMC_RICTY2.244e-3751.57Fumarate hydratase class II OS=Rickettsia typhi GN... [more]
FUMC_BACAN2.244e-3751.90Fumarate hydratase class II OS=Bacillus anthracis ... [more]
FUMC_WIGBR3.828e-3750.31Fumarate hydratase class II OS=Wigglesworthia glos... [more]
FUMC_MYXXD3.828e-3753.46Fumarate hydratase class II OS=Myxococcus xanthus ... [more]
FUMC2_BRAJA1.900e-3649.69Fumarate hydratase class II 2 OS=Bradyrhizobium ja... [more]
FUMC_PASMU3.240e-3653.46Fumarate hydratase class II OS=Pasteurella multoci... [more]
FUMC_METAC3.240e-3652.83Fumarate hydratase class II OS=Methanosarcina acet... [more]

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Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
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