FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_PSESM (Fumarate hydratase class II OS=Pseudomonas syringae pv. tomato GN=fumC-1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.527e-36
Identity = 86/158 (54.43%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            RSL NF IG +R  MP  ++ A  ++KK AA+VN   G  PA I + I QAA EV +G+ +  FPLVVWQTGSGTQSNMN NEVIA RA E+ G  RG K  VHPNDHVNRSQSSND FPT MHIA A     +L+P +  L + L  ++      VK
Sbjct:   26 RSLINFAIGDQR--MPLAVLHALTLIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDAQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGQGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIATAQAVKEQLLPAIAELSSGLAEQAARHMKLVK 181          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_CHRVO (Fumarate hydratase class II OS=Chromobacterium violaceum GN=fumC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.527e-36
Identity = 82/159 (51.57%), Postives = 106/159 (66.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL +F I  E+  MP  ++ A   +K+  A+ N   G LD A   AI  AA EV  G+ +  FPL VWQTGSGTQSNMN NEV+ANRA+E+LG +RG  ++VHPND VN  QSSND FPT MH+AAA +   RL+P+L +L ++L SK+  F   VK+
Sbjct:   29 RSLAHFRISSEK--MPPELILALARVKRACAEANRGLGKLDDAKAAAIAGAADEVLAGRHDGEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGRRGPGRLVHPNDDVNLGQSSNDIFPTAMHVAAATQVKERLLPSLDLLRHALESKAEAFADVVKI 185          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_HELPY (Fumarate hydratase class II OS=Helicobacter pylori GN=fumC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.219e-36
Identity = 81/159 (50.94%), Postives = 109/159 (68.55%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK-RGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL+NF IG   E+MP+ ++ AF  LK+  A VN + G L     +AI++A   + +G+L   FPL +WQTGSGTQ+NMN NEVIAN+A EILG   R +K++HPND VN SQSSNDTFPT MHI + +E   RL+P+L+ L  +   KS +F+  VK+
Sbjct:   27 RSLENFKIG--TEKMPKELIGAFAKLKRSLAVVNHKLGKLSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFREKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKSQQFKEIVKI 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_CHLCV (Fumarate hydratase class II OS=Chlamydophila caviae GN=fumC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.428e-36
Identity = 78/147 (53.06%), Postives = 98/147 (66.67%), Query Frame = 1
Query:   37 ERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            E MP+ ++RA  ++K+CAAK N + G LD      I+ AA E+ EG   +HFPL VWQTGSGTQSNMN NEVIAN A +  G   G K  +HPNDHVN+SQSSND FPT MHIAA +    +LIP +  L  +L +K  EF+  VK+
Sbjct:   35 EVMPKEVIRALVLIKQCAAKANHDLGFLDSKYCDMIVSAASEILEGGFEEHFPLKVWQTGSGTQSNMNVNEVIANLAIQRHGGVVGSKTPIHPNDHVNKSQSSNDVFPTAMHIAAVINLKKKLIPAMDHLQRALDAKVAEFRDCVKI 181          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_HAEIN (Fumarate hydratase class II OS=Haemophilus influenzae GN=fumC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.231e-35
Identity = 83/159 (52.20%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQ-AAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS  NF IG     MP  I+ AFG LKK AA  N + G+ P   + ++  A  E+   KL+D FPLV+WQTGSGTQSNMN NEV+ANRA  + G K GEK I+HPND VN+SQSSNDTFPT MHIAA  +     IP ++ L  +  +KS  F+  VK+
Sbjct:   27 RSRNNFKIGPAAS-MPHEIIEAFGYLKKAAAFANHDLGVLPLEKRDLIALACDEILANKLDDQFPLVIWQTGSGTQSNMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTFPTAMHIAAYKKVVEHTIPCVERLQKTFAAKSEAFKNVVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAAR (Fumarate hydratase class II OS=Staphylococcus aureus (strain MRSA252) GN=fumC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.608e-35
Identity = 77/158 (48.73%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L     ++ +HPND VN+SQSSNDTFPT MH+A   E  ++L P LK+L N+L  K  +F   +K+
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHHSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAAC (Fumarate hydratase class II OS=Staphylococcus aureus (strain COL) GN=fumC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.608e-35
Identity = 77/158 (48.73%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A   E  ++L P LK+L N+L  K  +F   +K+
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAAIANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_HELPJ (Fumarate hydratase class II OS=Helicobacter pylori J99 GN=fumC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.100e-35
Identity = 79/159 (49.69%), Postives = 109/159 (68.55%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK-RGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL+NF IG   E+MP+ ++ AF  LK+  A VN + G L     +AI++A   + +G+L   FPL +WQTGSGTQ+NMN NEVIAN+A EILG   R +K++HPND VN SQSSNDTFPT MH+ + +E   +L+P+L+ L  +   KS +F+  VK+
Sbjct:   27 RSLENFKIG--TEKMPKELIGAFAKLKRSLAVVNHKLGKLSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFREKKLIHPNDDVNMSQSSNDTFPTAMHVVSVLEITHKLLPSLENLLKTFKEKSQQFKEIVKI 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAAW (Fumarate hydratase class II OS=Staphylococcus aureus (strain MW2) GN=fumC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.583e-35
Identity = 77/158 (48.73%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A   E  ++L P LK+L N+L  K  +F   +K+
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAAS (Fumarate hydratase class II OS=Staphylococcus aureus (strain MSSA476) GN=fumC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.583e-35
Identity = 77/158 (48.73%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A   E  ++L P LK+L N+L  K  +F   +K+
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKI 182          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_PSESM5.527e-3654.43Fumarate hydratase class II OS=Pseudomonas syringa... [more]
FUMC_CHRVO5.527e-3651.57Fumarate hydratase class II OS=Chromobacterium vio... [more]
FUMC_HELPY7.219e-3650.94Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_CHLCV9.428e-3653.06Fumarate hydratase class II OS=Chlamydophila cavia... [more]
FUMC_HAEIN1.231e-3552.20Fumarate hydratase class II OS=Haemophilus influen... [more]
FUMC_STAAR1.608e-3548.73Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAC1.608e-3548.73Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_HELPJ2.100e-3549.69Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_STAAW3.583e-3548.73Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAS3.583e-3548.73Fumarate hydratase class II OS=Staphylococcus aure... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
back to top