FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAAN (Fumarate hydratase class II OS=Staphylococcus aureus (strain N315) GN=fumC PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.583e-35
Identity = 77/158 (48.73%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN SQSSNDTFPT MH+A   E  ++L P LK+L N+L  K  +F+  +K+
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNESQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFESIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAAM (Fumarate hydratase class II OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fumC PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.583e-35
Identity = 77/158 (48.73%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN SQSSNDTFPT MH+A   E  ++L P LK+L N+L  K  +F+  +K+
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNESQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFESIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_OCEIH (Fumarate hydratase class II OS=Oceanobacillus iheyensis GN=fumC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.042e-34
Identity = 79/158 (50.00%), Postives = 101/158 (63.92%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS QNF IG E+  MP  I++AF ILK+  A+ N E GL +    +AI  AA +V    L DHFPLVVWQTGSGTQSNMN NEV+A    + L  +  +  +HPND VN+SQSSNDT+PT MHIAA ++    ++P L  L N+   K   F+  VK+
Sbjct:   27 RSKQNFPIGNEK--MPVEIIKAFAILKRSTAEANFELGLMERDKMEAIQYAADQVLNDSLTDHFPLVVWQTGSGTQSNMNVNEVLAFVGNKWLQEQGSDLKLHPNDDVNKSQSSNDTYPTAMHIAAVLKLEDTVLPALSQLKNTFAEKQSAFENIVKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_BLOFL (Fumarate hydratase class II OS=Blochmannia floridanus GN=fumC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.361e-34
Identity = 75/157 (47.77%), Postives = 106/157 (67.52%), Query Frame = 1
Query:    4 SLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            SL+ F+I    E+MP  +++A   +K+ +A+VN +  L D    +AI+ A  E+  G   + FPL VWQTGSGTQSNMN NEV+ANRA E+L   +   +VHPNDHVN+SQSSND FP+ MHIAA +   ++LIP +K+L  +   KS+EF+  +K+
Sbjct:   14 SLKFFNIS--TEKMPWELIKALAQIKRVSAQVNYDLKLLDYERSQAIIAAVDEILSGNHKNEFPLSVWQTGSGTQSNMNMNEVLANRANELLRKNQINIVVHPNDHVNKSQSSNDVFPSAMHIAAVVNLKTKLIPVIKLLQKTFLKKSIEFRNIIKI 168          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_SYNPX (Fumarate hydratase class II OS=Synechococcus sp. (strain WH8102) GN=fumC PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.322e-34
Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL--DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF IG   +++P  ++ A   +K+C A VN  +GL  D  +   I +A Q +  G+ +DHFPL VWQTGSGTQ+NMN NEVI+N AA+  G   G  + +HPNDH+NRSQS+ND FP  +H+AAA++    L+P LK L  SL +K+V +Q  +K+
Sbjct:   29 RSLNNFAIG--HQKIPAELIHALARIKQCCAAVNGRHGLLNDQQVA-LIERAGQAIQTGQQDDHFPLSVWQTGSGTQTNMNVNEVISNLAAQESGENLGSHRPLHPNDHINRSQSTNDVFPAAIHVAAALQLQQELLPELKRLIASLDAKAVAWQDIIKI 185          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_HALSA (Fumarate hydratase class II OS=Halobacterium salinarium GN=fumC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.033e-34
Identity = 79/157 (50.32%), Postives = 102/157 (64.97%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R+++NF I G         VRA G++KK AA+ N + GL D     AI+ AA EV  G+ +D FP+ V+QTGSGT SNMNANEVIANRAAE+LG + G+++VHPNDHVN  QSSND  PT MH+A+     + + P L+ L   L  K+  F G VK
Sbjct:   29 RAIENFPISGIA--FGRRFVRALGVVKKAAAQANRDLGLVDDERADAIVAAADEVIAGEHDDQFPVDVFQTGSGTSSNMNANEVIANRAAELLGEEIGDRVVHPNDHVNYGQSSNDVIPTAMHVASLDALVNDVKPGLETLAAELDDKADAFDGVVK 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_CHLTR (Fumarate hydratase class II OS=Chlamydia trachomatis GN=fumC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.033e-34
Identity = 81/159 (50.94%), Postives = 101/159 (63.52%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS + F  G  +E MP  I+ A   +KKCAAK N + G LD      I+ A  E+  G+ ++HFPL VWQTGSGTQSNMN NEVIAN A +  G + G K  VHPNDHVN+SQSSND FPT MHIAA       LIP L+ L   + +K++EF   +K+
Sbjct:   25 RSQEFFSYG--KESMPLEIIHALVKIKKCAAKANGDLGCLDAKRRDMIVAATDEILSGEFDEHFPLKVWQTGSGTQSNMNVNEVIANLAIQRHGGELGSKHPVHPNDHVNKSQSSNDVFPTAMHIAAVQSIKGSLIPALEHLKKVIDAKALEFARDIKI 181          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_CHLMU (Fumarate hydratase class II OS=Chlamydia muridarum GN=fumC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.824e-34
Identity = 81/159 (50.94%), Postives = 101/159 (63.52%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS   F  G  +E MP  +++A   +KKCAAK N +   LD      I+ A+ E+  G L +HFPL VWQTGSGTQSNMN NEVIAN A +  G + G K  VHPNDHVN+SQSSND FPT MHIAA       LIP L+ L  +L +K++EF   +K+
Sbjct:   25 RSKNFFSYG--KELMPIEVIQALVKIKKCAAKANGDLQCLDAKRRDMIVAASDEILSGGLEEHFPLKVWQTGSGTQSNMNVNEVIANLAIKRHGGELGSKNPVHPNDHVNKSQSSNDVFPTAMHIAAVQSIKGSLIPALEHLQKNLDAKALEFSRDIKI 181          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_CHLPN (Fumarate hydratase class II OS=Chlamydia pneumoniae GN=fumC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.966e-33
Identity = 78/147 (53.06%), Postives = 95/147 (64.63%), Query Frame = 1
Query:   37 ERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            E MP  ++RA   +KKCAA+ N + G LD      I+ AA E+ EG   +HFPL VWQTGSGTQSNMN NEVIAN A    G   G K  +HPNDHVN+SQSSND FPT MHIAA +   ++LIP L  +   L +K  EF+  VK+
Sbjct:   35 ELMPYEVIRALVWIKKCAAQANQDLGFLDSKHCDMIVAAADEILEGGFEEHFPLKVWQTGSGTQSNMNVNEVIANLAIRHHGGVLGSKDPIHPNDHVNKSQSSNDVFPTAMHIAAVISLKNKLIPALDHMIRVLDAKVEEFRHDVKI 181          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAHJ (Fumarate hydratase class II OS=Staphylococcus haemolyticus (strain JCSC1435) GN=fumC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.353e-33
Identity = 76/158 (48.10%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +ERMP  +V  F  LK+ AA  N E G L  A   AI+ A   + +G+L++HFPLVVWQTGSGTQSNMN NEV++  A + L  +  ++ +HPND VN+SQSSNDTFPT MH+A   E  ++L P LK L ++   K  ++Q  +K+
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRGAALANHELGKLSDAKKDAIVYACDLILKGELDEHFPLVVWQTGSGTQSNMNVNEVVSFVANKYLKEQGIDESIHPNDDVNKSQSSNDTFPTAMHVALYHEVETKLEPALKHLRDTFKEKEDKYQSIIKI 182          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_STAAN3.583e-3548.73Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAM3.583e-3548.73Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_OCEIH1.042e-3450.00Fumarate hydratase class II OS=Oceanobacillus ihey... [more]
FUMC_BLOFL1.361e-3447.77Fumarate hydratase class II OS=Blochmannia florida... [more]
FUMC_SYNPX2.322e-3447.50Fumarate hydratase class II OS=Synechococcus sp. (... [more]
FUMC_HALSA3.033e-3450.32Fumarate hydratase class II OS=Halobacterium salin... [more]
FUMC_CHLTR3.033e-3450.94Fumarate hydratase class II OS=Chlamydia trachomat... [more]
FUMC_CHLMU8.824e-3450.94Fumarate hydratase class II OS=Chlamydia muridarum... [more]
FUMC_CHLPN1.966e-3353.06Fumarate hydratase class II OS=Chlamydia pneumonia... [more]
FUMC_STAHJ3.353e-3348.10Fumarate hydratase class II OS=Staphylococcus haem... [more]

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Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
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