FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_HAEDU (Fumarate hydratase class II OS=Haemophilus ducreyi GN=fumC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.380e-33
Identity = 83/159 (52.20%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS  NF IG E   MP  I+ AF  LKK AA  N E G L       I     E+   KL D FPLV+WQTGSGTQSNMN NEVIANRA  + G   GEK I+HPND VN+SQSSNDT+PT MHIAA  +     IP ++ L  +   KS  F+  VK+
Sbjct:   27 RSRNNFRIGPEAS-MPVEIIEAFAYLKKAAAFANAELGALTTEKRDLIAMVCDEILANKLADEFPLVIWQTGSGTQSNMNLNEVIANRAHVLQGGALGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEVTIPAIERLQKTFAIKSEAFKDVVKI 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STRAW (Fumarate hydratase class II OS=Streptomyces avermitilis GN=fumC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.470e-33
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R+++NF I G+R  +    + A   +K  AAKVN E G LD  + +AI +AA EVAEG+ ++HFP+ V+QTGSGT SNMNANEVIA  A E LG     + VHPNDHVN SQSSND FP+ +HIAA       L+P L+ L  +L  KS EF   VK
Sbjct:   34 RAVENFPISGQR--LERAHIEALARIKGAAAKVNAELGVLDKDVAEAIQEAAAEVAEGRWDEHFPVDVFQTGSGTSSNMNANEVIATLATERLG-----RDVHPNDHVNASQSSNDVFPSSIHIAATAAVTRDLVPALEHLAAALGRKSEEFADVVK 183          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAES (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fumC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.708e-32
Identity = 72/158 (45.57%), Postives = 98/158 (62.03%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +E MP  ++  F  LK+ AA  N E G L      AI+ A   +  G+L++HFPLV+WQTGSGTQSNMN NEV++  A E L     ++ +HPND VN+SQSSNDTFPT MH+A   E  ++L P L  L  +   K  ++Q  +K+
Sbjct:   27 RSKRNFPVG--KEHMPIQVIYGFAQLKRGAALANHELGKLSDEKKNAIVYACDRILNGELDNHFPLVIWQTGSGTQSNMNVNEVVSYVANEYLKKHGSKETIHPNDDVNKSQSSNDTFPTAMHVALFHEVETKLEPALNHLRQTFKEKEDQYQSIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAEQ (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fumC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.708e-32
Identity = 72/158 (45.57%), Postives = 98/158 (62.03%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +E MP  ++  F  LK+ AA  N E G L      AI+ A   +  G+L++HFPLV+WQTGSGTQSNMN NEV++  A E L     ++ +HPND VN+SQSSNDTFPT MH+A   E  ++L P L  L  +   K  ++Q  +K+
Sbjct:   27 RSKRNFPVG--KEHMPIQVIYGFAQLKRGAALANHELGKLSDEKKNAIVYACDRILNGELDNHFPLVIWQTGSGTQSNMNVNEVVSYVANEYLKKHGSKETIHPNDDVNKSQSSNDTFPTAMHVALFHEVETKLEPALNHLRQTFKEKEDQYQSIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STRCO (Fumarate hydratase class II OS=Streptomyces coelicolor GN=fumC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.842e-32
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R+++NF + G+R  +    + A   +K  AAKVN E G LD  +  AI +AA EVAEGK ++HFP+ V+QTGSGT SNMN NEV+A  A E LG     + VHPNDHVN SQSSND FP+ +HIAA       LIP L  L  +L  K+ EF   VK
Sbjct:   28 RAVENFPVSGQR--IERAHIEALARIKSAAAKVNAELGVLDEDVAGAIQEAAGEVAEGKWDEHFPVDVFQTGSGTSSNMNTNEVVATLATERLG-----RDVHPNDHVNASQSSNDVFPSSIHIAATAAVTRDLIPALDHLAGALERKAGEFADVVK 177          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_LISIN (Fumarate hydratase class II OS=Listeria innocua GN=fumC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.324e-32
Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVN-MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF IG     MP+ I+ AF  LKK AAKVN +E  L  A   AI     ++ +G+L++HFPLVVWQTGSGTQSNMN NEVIA+ A   L    GE+ VHPND VN SQSSNDTFPT MHIAA     ++L+  +  +   L +K  ++   VK+
Sbjct:   26 RSRRNFAIGDNY--MPKEIIYAFAQLKKAAAKVNALEGKLSEAKSVAIGNVCDQIIQGELDEHFPLVVWQTGSGTQSNMNVNEVIAHVANLTL----GEEKVHPNDDVNMSQSSNDTFPTAMHIAAYQALVTKLLSEITKMEEVLTTKKNQYMQLVKI 177          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_STAS1 (Fumarate hydratase class II OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=fumC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 74/158 (46.84%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF +G  +ERMP  +V  F  LK+ AA  N   G L  A   AI+ A   V   +L++HFPLVVWQTGSGTQSNMN NEV++  A   L  +  ++ +HPND VN+SQSSNDTFPT MH+A   E  ++L P LK L ++   K  ++   +K+
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRGAALANHALGKLSDAKKDAIVYACDRVLNKELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANTYLKEQGIDESIHPNDDVNKSQSSNDTFPTAMHVALYNEVETKLEPALKTLRDTFKQKEEQYHDIIKI 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_LISMF (Fumarate hydratase class II OS=Listeria monocytogenes serotype 4b (strain F2365) GN=fumC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.193e-30
Identity = 79/158 (50.00%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF IG     MP  I+ AF  LKK  AKVN   G L      AI Q   ++ +G+L++HFPLVVWQTGSGTQSNMN NEVIA+ A   L    GE  +HPND VN SQSSNDTFPT MHIAA     ++L+P +  +   L  K  ++   VK+
Sbjct:   26 RSKRNFAIGDNP--MPIEIIYAFAQLKKATAKVNAAEGKLSEEKAIAIGQVCDQIIQGELDEHFPLVVWQTGSGTQSNMNVNEVIAHVANLTL----GEGQIHPNDDVNMSQSSNDTFPTAMHIAAYGALVTKLLPEITKMEAVLAEKKSKYMHLVKI 177          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_LISMO (Fumarate hydratase class II OS=Listeria monocytogenes GN=fumC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.657e-30
Identity = 79/158 (50.00%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS +NF IG     MP  I+ AF  LKK  AKVN   G L      AI Q   ++ +G+L++HFPLVVWQTGSGTQSNMN NEVIA+ A   L    GE  +HPND VN SQSSNDTFPT MHIAA     ++L+P +  +   L  K  ++   VK+
Sbjct:   26 RSKRNFAIGDNP--MPIEIIYAFAQLKKATAKVNAAEGKLAEEKAIAIGQVCDQIIQGELDEHFPLVVWQTGSGTQSNMNVNEVIAHVANLTL----GEGQIHPNDDVNMSQSSNDTFPTAMHIAAYGALVTKLLPEITKMEAVLTEKKNKYMHLVKI 177          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_MYCTU (Fumarate hydratase class II OS=Mycobacterium tuberculosis GN=fumC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.470e-30
Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R+++NF I G      +  +RA G+LK   A+VN + GL  P    AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA      +G   +HPND VN SQSSNDTFPT  HIAA     + LIP L+ LH++L +K++++   VK
Sbjct:   34 RAVENFPISGRGLERTQ--IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVK 182          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_HAEDU4.380e-3352.20Fumarate hydratase class II OS=Haemophilus ducreyi... [more]
FUMC_STRAW7.470e-3351.59Fumarate hydratase class II OS=Streptomyces avermi... [more]
FUMC_STAES3.708e-3245.57Fumarate hydratase class II OS=Staphylococcus epid... [more]
FUMC_STAEQ3.708e-3245.57Fumarate hydratase class II OS=Staphylococcus epid... [more]
FUMC_STRCO4.842e-3250.32Fumarate hydratase class II OS=Streptomyces coelic... [more]
FUMC_LISIN6.324e-3250.63Fumarate hydratase class II OS=Listeria innocua GN... [more]
FUMC_STAS11.079e-3146.84Fumarate hydratase class II OS=Staphylococcus sapr... [more]
FUMC_LISMF1.193e-3050.00Fumarate hydratase class II OS=Listeria monocytoge... [more]
FUMC_LISMO2.657e-3050.00Fumarate hydratase class II OS=Listeria monocytoge... [more]
FUMC_MYCTU3.470e-3047.77Fumarate hydratase class II OS=Mycobacterium tuber... [more]

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Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
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