FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_MYCBO (Fumarate hydratase class II OS=Mycobacterium bovis GN=fumC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.470e-30
Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R+++NF I G      +  +RA G+LK   A+VN + GL  P    AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA      +G   +HPND VN SQSSNDTFPT  HIAA     + LIP L+ LH++L +K++++   VK
Sbjct:   34 RAVENFPISGRGLERTQ--IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVK 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_CORGL (Fumarate hydratase class II OS=Corynebacterium glutamicum GN=fumC PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.532e-30
Identity = 77/157 (49.04%), Postives = 96/157 (61.15%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R+++NF I G      +  +RA G+LK   A+VN + G LD     AI+ A +E+A GK +  FP+ V+QTGSGT SNMN NEVIA+ A      K     VHPNDHVN  QSSNDTFPT  H+AA     + LIP LKVLH SL  K+ E+   VK
Sbjct:   34 RAVENFPISGRGLESAQ--IRAMGLLKAACAQVNKDSGALDAEKADAIIAAGKEIASGKHDAEFPIDVFQTGSGTSSNMNTNEVIASIA------KANGVEVHPNDHVNMGQSSNDTFPTATHVAATEAAVNDLIPGLKVLHESLAKKANEWSEVVK 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_PROMM (Fumarate hydratase class II OS=Prochlorococcus marinus (strain MIT 9313) GN=fumC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.919e-30
Identity = 74/159 (46.54%), Postives = 97/159 (61.01%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RSL NF I    +RMP  ++ A  ++K+ AA VN   G LD      I++AA  VA G  +D FPL VWQTGSGT +NMN NEVI+N A++      G  + VHPNDHVNRSQS+ND FPT +HIAA     + L+P L+ L  +   KS  +   +K+
Sbjct:   30 RSLLNFAIS--TDRMPVELIHALALIKQAAASVNCRLGVLDEVQRDQIIKAASAVASGLHDDQFPLRVWQTGSGTHTNMNVNEVISNLASQANDEPLGSHRPVHPNDHVNRSQSTNDAFPTAIHIAAVQGITNNLLPELEQLIAAFARKSDAWSDIIKI 186          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_COREF (Fumarate hydratase class II OS=Corynebacterium efficiens GN=fumC PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 7.731e-30
Identity = 77/157 (49.04%), Postives = 96/157 (61.15%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R+++NF I G      +  +RA G+LK   A+VN + G LD A   AI+ A +E+A GK +  FP+ V+QTGSGT SNMN NEVIA+ A      K     VHPND VN  QSSNDTFPT  H+AA     + LIP LKVLH SL  K+ E+   VK
Sbjct:   34 RAVENFPISGRGLESAQ--IRAMGLLKAACAQVNKDSGALDAAKADAIIAAGKEIATGKHDAEFPIDVFQTGSGTSSNMNTNEVIASIA------KANGTEVHPNDDVNMGQSSNDTFPTATHVAATEAAVNDLIPGLKVLHESLAKKANEWDSVVK 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC1_PSEAE (Fumarate hydratase class II 1 OS=Pseudomonas aeruginosa GN=fumC1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.319e-29
Identity = 71/157 (45.22%), Postives = 99/157 (63.06%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R++ NF + G+R  MP+  VRA  + K  AA+ N+    LD  +G+AI     ++ +     HFP+ V+QTGSGT SNMNANEV+A  A+  LG K     V+PNDHVN  QSSND  P+ +HI+AA+E + RL+P L+ L  ++ SK+ E   YVK
Sbjct:   28 RAVNNFPVSGQR--MPQAFVRALLLAKAAAARANVSLQQLDAPMGEAIADTCLQLLQEDFMQHFPVDVFQTGSGTSSNMNANEVVATLASRRLGGK-----VNPNDHVNCGQSSNDIIPSTIHISAALEISERLLPALRHLEQTIQSKAGEVHAYVK 177          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_BACSU (Aspartate ammonia-lyase OS=Bacillus subtilis GN=ansB PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.544e-29
Identity = 71/159 (44.65%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R+ +NF I G +  + E ++ A  I+KK AA  NM+   L   IG+AI+QAA E+ EGK +D F +   Q G+GT  NMNANEVI NRA EI+GHK+G+ I + PN HVN SQS+ND FPT +HI + ++   +L+  ++ +H+    K+ EF   +K+
Sbjct:   32 RASENFPITGYK--IHEEMINALAIVKKAAALANMDVKRLYEGIGQAIVQAADEILEGKWHDQFIVDPIQGGAGTSMNMNANEVIGNRALEIMGHKKGDYIHLSPNTHVNMSQSTNDVFPTAIHI-STLKLLEKLLKTMEDMHSVFKQKAQEFDSVIKM 187          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFT (Fumarate hydratase class II OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=fumC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.612e-27
Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R+++NF I G    MP+  + A G +K  AAKVN E GL P ++ K I  AA +VA G+ +  FP+ ++QTGSGT SNMNANEVIA      L  +  +  +HPNDHVN  QSSND  PT + I+A +    RL+P LK L   ++ ++      VK
Sbjct:   35 RAIENFPISGRS--MPQGFIHALGFIKAAAAKVNAELGLLPKSMAKEIEAAALDVAAGRYDAEFPVDIYQTGSGTSSNMNANEVIAT-----LAMRATKGPIHPNDHVNLGQSSNDVVPTAIRISATLAVQGRLLPALKHLRKMINKRARGLGSVVK 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFA (Fumarate hydratase class II OS=Xylella fastidiosa GN=fumC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.612e-27
Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            R+++NF I G    MP+  + A G +K  AAKVN E GL P  + K I  AA +VA G+ +  FP+ ++QTGSGT SNMNANEVIA      L  +  ++ +HPNDHVN  QSSND  PT + I+A +    RL+P LK L   ++ ++      VK
Sbjct:   35 RAIENFPISGRS--MPQGFIHALGFIKAAAAKVNAELGLLPKPMAKEIEAAALDVAAGRYDADFPVDIYQTGSGTSSNMNANEVIAT-----LAMRATKEPIHPNDHVNLGQSSNDVVPTAIRISATLAVQGRLLPALKHLRKMINKRARGLGSVVK 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_PROMA (Fumarate hydratase class II OS=Prochlorococcus marinus GN=fumC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.612e-27
Identity = 69/158 (43.67%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            RSL NF IG    +MP  ++ +   +K  AA VN   G LD      I+ A  E++ G  ++ FPL VWQTGSGTQ+NMN NEVI+N A+ + G+K G  + +HPNDHVNRSQS+ND FP  + IA   E    L+P L  L  +   K +++   +K
Sbjct:   29 RSLINFAIG--HNKMPMKLIYSIVQIKASAAIVNCRLGVLDKQRKNFILNACNEISNGMHDEQFPLSVWQTGSGTQTNMNVNEVISNIASHLNGNKLGSHEPLHPNDHVNRSQSTNDVFPAAIQIATVQEILENLLPELDQLIETFDKKIIKWNRIIK 184          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_SULSO (Fumarate hydratase class II OS=Sulfolobus solfataricus GN=fumC PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.105e-27
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = 1
Query:   40 RMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVK 468
            + P  I+ + G+LKK  AKVN + GL D  I  +I++A+ ++ +GKL+D   L V+QTGSGT  NMN NEVIA  A+     K     VHPNDHVN  QSSNDT PT + IAA  E  +RL+P L+ + +SL+ K+ E++  +K
Sbjct:   17 KFPRRIIWSMGVLKKSCAKVNADLGLLDKKIADSIIKASDDLIDGKLDDKIVLDVFQTGSGTGLNMNVNEVIAEVASSYSNLK-----VHPNDHVNFGQSSNDTVPTAIRIAAVAEVTNRLLPALQQIISSLNKKAEEYKDVIK 155          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_MYCBO3.470e-3047.77Fumarate hydratase class II OS=Mycobacterium bovis... [more]
FUMC_CORGL4.532e-3049.04Fumarate hydratase class II OS=Corynebacterium glu... [more]
FUMC_PROMM5.919e-3046.54Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC_COREF7.731e-3049.04Fumarate hydratase class II OS=Corynebacterium eff... [more]
FUMC1_PSEAE1.319e-2945.22Fumarate hydratase class II 1 OS=Pseudomonas aerug... [more]
ASPA_BACSU6.544e-2944.65Aspartate ammonia-lyase OS=Bacillus subtilis GN=an... [more]
FUMC_XYLFT1.612e-2743.95Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_XYLFA1.612e-2743.95Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_PROMA1.612e-2743.67Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC_SULSO2.105e-2746.53Fumarate hydratase class II OS=Sulfolobus solfatar... [more]

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Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
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