FC931773

Overview
NameFC931773
Unique NameFC931773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15389 contig Ccv1_Contig15389:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.699e-23
Identity = 52/167 (31.14%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  253 RLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQI 753
            +LF R+R +H++ GGG  ADV LWR K +S G++    A W++FE F Y + TL+             W+ + + + +  P +PE  + E    + +   RI +N    V   IA  RD + +     +L++LS++GS  +F TL + +++++  +P  YE+YE  I
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.220e-23
Identity = 56/163 (34.36%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  268 ERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756
            E  VHQ    G  AD+ +W+N++    +LG  T +W LFE   Y     V +T          WA +     +  P +P + + EE    VA A R+ +N   AV R I  GR+ K        LW +S VG++ NFLT+ Y+ +VL  ++P LYE+Y+  ID
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLID 164          
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.945e-23
Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  265 RERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWA--NAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQI 753
            R R ++   GGG+ AD+  W+NKK S  +LG  T IW LFE+ EY  +T +C            W+   +   I+  PP I ++ + E  +  + +    ++N     L  I+SG+D +   +A+ +LW+LSVVG++ + LTL YI  V L  +P LYE+YE ++
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFN----KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEEL 178          
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  277 VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756
            VHQ  G G  AD+ LWRN+  +  +L  +T  W LFE   Y+LL+ V +           WA + T + +  P +P + +PEE   + A   R+ +N+  ++   I   R+    L     LW +S VG+  N LTL YI ++L    P +YEKY+  ID
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172          
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.454e-15
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  277 VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWAN-AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756
            V Q+ G G  AD+ LW++K  S   L  AT  W L E  E  L+ L+C            WA     F  + PP   E++ P+ P   + S     L     +L  IA G+D K+FL  I  + ++  +GS+ + LT+ YI LV    +P +Y +++  ID
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHL----LMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELID 160          
The following BLAST results are available for this feature:
BLAST of FC931773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLL_ARATH1.699e-2331.14Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLJ_ARATH2.220e-2334.36Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH4.945e-2334.55Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH6.045e-2133.75Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH8.454e-1531.68Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34201A09EF PostHarveN Citrus clementina cDNA clone C34201A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931773 ID=FC931773; Name=FC931773; organism=Citrus clementina; type=EST; length=758bp
AGAAATTACACCGGACAGAAACATCAGCTTTCTTTTCCCTTTCATTGTCC
CTCGCACCGAAATTTCGCCAAAAAAAAAAAATTCAATTAGGTTTTCCGAG
AAAAGATGGCGGAGCGTGAAGAGAATCCGGCGGAACCGCCAATGGAGAAG
GTAAGCGAGAAGATTCACGATCACGATTCCTCGTCATCGTCGTCTTCGGA
TTCTGATAATGAGGAACCGGCTGCCCAGTCGTCTGTGAAGGCGGATATTT
ATCGTTTATTTGGCAGAGAGCGGCCGGTTCACCAGGTTTTCGGTGGTGGA
AAGCCTGCTGATGTTTTTTTGTGGAGGAACAAGAAGATTTCAGCGGGTGT
ACTAGGTGGAGCCACGGCTATCTGGGTCCTTTTCGAGTTGTTTGAATACC
ACCTGCTTACTTTGGTCTGCCACACCTTAATTCTTGCACTTGCAATCTTG
TTCCTGTGGGCCAATGCCCATACCTTCATTAAGAAGGCCCCACCCTGCAT
CCCTGAAGTTCATCTTCCTGAGGAGCCATTCCTGCAGGTTGCTTCTGCCT
TTAGGATTGAACTCAACCATGCTTTTGCAGTATTGCGGAGTATTGCATCA
GGAAGAGATTTGAAGAGTTTTCTCATGGCTATAGCTGCCTTGTGGGTGCT
GTCAGTTGTGGGGAGTTGGTGCAACTTCTTGACCTTGTTTTATATAGCTT
TGGTTTTGCTGCACATTTTGCCTGGTCTCTATGAGAAGTATGAGGGACAG
ATTGATCC
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