FC931775

Overview
NameFC931775
Unique NameFC931775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931775_ssr15 microsatellite FC931775_ssr15:15..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10254 contig Ccv1_Contig10254:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_AQUAE (Adenosylhomocysteinase OS=Aquifex aeolicus GN=ahcY PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 50/138 (36.23%), Postives = 68/138 (49.28%), Query Frame = 2
Query:  167 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 577
            EF VKDLS A+ G   IE AE++MP L   R  F   +P KG KI+  LH+T +TA L+ TL   GAEV   + N  STQD                  GE  + Y+      ++      PD+++DDG D    +H+
Sbjct:    2 EFDVKDLSLAEEGLKRIEWAEMDMPVLRQIRERFSKEKPLKGKKISACLHVTTETANLMRTLKEGGAEVYLTASNPLSTQDDVAAALVKYFEIPVFAIRGEDRETYYKHLRAVIE----KEPDVVIDDGADLISTLHK 135          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_METAC (Adenosylhomocysteinase OS=Methanosarcina acetivorans GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 47/141 (33.33%), Postives = 66/141 (46.81%), Query Frame = 2
Query:  203 GRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWE-GETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 622
            G +++E A   MP +   R +F   +P KG K+  +LH+  +TAVL+ETL A GA+V    CN  STQD                  G    EY+   +K LD      PD+ +DDG D    +H+        E+T  LP
Sbjct:   10 GNMKMEWARNHMPVIAIIREKFEKEKPLKGLKVGMALHVEAKTAVLVETLAAGGAQVAISGCNPLSTQDDVARALDTRKNISCFARYGCCTSEYYEAIDKVLDI----EPDITIDDGADLIFKLHK--------ERTDLLP 138          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_THEAC (Adenosylhomocysteinase OS=Thermoplasma acidophilum GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 42/125 (33.60%), Postives = 60/125 (48.00%), Query Frame = 2
Query:  203 GRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIH 574
            G L +  A   MP +   R  F   +PFKG K+  +LH+  +T +    L   GAEV+  SCN  S+ D                 +GET +EY+    + LD      PD+I+DDGGD T ++H
Sbjct:    6 GFLRLAWARDHMPVIAEIRKRFQAEKPFKGIKVAMALHVEAKTGIFALLLKEGGAEVKMASCNPLSSDDSVVQSLKEDYGMPVFARKGETSEEYYEYLHRTLD----VQPDIIIDDGGDLTKIVH 126          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_METMA (Adenosylhomocysteinase OS=Methanosarcina mazei GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 2
Query:  203 GRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWE-GETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 577
            G +++E A   MP L   R +F   +P KG K+  +LH+  +TAVL+ETL A GA+V    CN  STQD                + G    EY+   ++ LD      PD+ +DDG D    +H+
Sbjct:   10 GNMKMEWARNHMPVLAIIREKFEKEKPLKGLKVGMALHVEAKTAVLVETLAAGGAQVAISGCNPLSTQDDVAAALDTRENINCFAKYGCCTGEYYEAIDRVLDI----EPDITIDDGADLIFKLHK 131          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_THEVO (Adenosylhomocysteinase OS=Thermoplasma volcanium GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 43/125 (34.40%), Postives = 60/125 (48.00%), Query Frame = 2
Query:  203 GRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIH 574
            G L +E A   MP +   R  F   +PFKG  I  +LH+  +T +    L   GA VR  SCN  S+ D                 +GET +EY+   ++ L+      PD+I+DDGGD T L+H
Sbjct:    6 GFLRLEWARDHMPVIAEIRKRFLDEKPFKGINIAMALHVEAKTGIFSLLLKEGGANVRMASCNPLSSDDSVVESLKTDYGMPVFARKGETQEEYYENLQRTLE----KPPDIIIDDGGDLTKLVH 126          
The following BLAST results are available for this feature:
BLAST of FC931775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_AQUAE1.773e-1336.23Adenosylhomocysteinase OS=Aquifex aeolicus GN=ahcY... [more]
SAHH_METAC2.830e-1133.33Adenosylhomocysteinase OS=Methanosarcina acetivora... [more]
SAHH_THEAC3.697e-1133.60Adenosylhomocysteinase OS=Thermoplasma acidophilum... [more]
SAHH_METMA6.305e-1134.13Adenosylhomocysteinase OS=Methanosarcina mazei GN=... [more]
SAHH_THEVO8.235e-1134.40Adenosylhomocysteinase OS=Thermoplasma volcanium G... [more]

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Properties
Property NameValue
Genbank descriptionC34201A11EF PostHarveN Citrus clementina cDNA clone C34201A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931775 ID=FC931775; Name=FC931775; organism=Citrus clementina; type=EST; length=693bp
GTCGCTCACACCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTT
GTTTGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTC
TTGTAGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAA
ATCCGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACT
TCGGCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATG
GCTTGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGAT
CACCGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACGC
TCACCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCA
ACCCAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTT
TGCCTGGGAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAG
CCCTGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGT
GGTGACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTA
CGAGAAGACCGGGAAGTTGCCCGACCCGGCCTCCACCGACAACGCCGAGT
TTCAGATTGTTTTGACTATCATTAGAGATGGGTTGAAGGCCGA
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