FC931777

Overview
NameFC931777
Unique NameFC931777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11663 contig Ccv1_Contig11663:167..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGC2_DANRE (Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Danio rerio GN=hmgcll1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1
Query:  442 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696
            P +VKIVEVGPRDGLQNEK  VPT VK++LI  L  +GLPV+EATSFVS KWV Q+AD   V++ ++     R PVLTPN++G +
Sbjct:   40 PVYVKIVEVGPRDGLQNEKEIVPTEVKIQLIDLLSQTGLPVIEATSFVSSKWVAQMADHTAVLKGIKRSPDVRYPVLTPNIQGFQ 124          
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_BACSU (Hydroxymethylglutaryl-CoA lyase yngG OS=Bacillus subtilis GN=yngG PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  442 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696
            P+ V I EVGPRDGLQNE   + T  K+  I +L  +GL  +E TSFV PKW+P L DA DV + +   +G     L PN RGL+
Sbjct:    4 PKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAALVPNQRGLE 88          
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_PSEMV (Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mevalonii GN=mvaB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  451 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696
            VK+ EVGPRDGLQNE+  +    +V LI  L  +GL  +EA +FVSP+WVPQ+A + +V+  +   +G     L PN +G +
Sbjct:    4 VKVFEVGPRDGLQNERQPLSVAARVGLIGELAGTGLRHIEAGAFVSPRWVPQMAGSDEVLRQLPSNDGVSYTALVPNRQGFE 85          
The following BLAST results are available for this feature:
BLAST of FC931777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HMGC2_DANRE3.716e-2260.00Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyas... [more]
HMGCL_BACSU2.184e-1448.24Hydroxymethylglutaryl-CoA lyase yngG OS=Bacillus s... [more]
HMGCL_PSEMV1.415e-1343.90Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mev... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201B01EF PostHarveN Citrus clementina cDNA clone C34201B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931777 ID=FC931777; Name=FC931777; organism=Citrus clementina; type=EST; length=705bp
GAAATTCTAAAGTTTCTTCCTTTTTCTATTCTCAGAAACCCTAATTTTGA
CTTCAGTGTATCTTTCACCATCATGTCAAGCTTGGAGGAGCCACTTGGTC
TTGACAAGCTGCCAAGCATGAGCACCATTGATAGGATTCAGAGGTTCTCC
TCCAATGCTTGCAGACCTAGTGGGGATGGTATGGGAATGGGGAGCTGCTG
GATTGAGGGGAGCAGTTGCAGCACCTCCAACAGTTATGATGAAGATTATG
ATGAATATACAAGAGAGGCATTCCCATGGAGAAGACATACAAGGGACATG
TCTCATGGTGACTCCTTCAGTCGTAGAACTGTAAGCTTAGGAAGAAATCA
CAAGATGTTTGGAAGTGCTTGTGACATATATAATTCCAATTGCAATGACA
AAGACATACGAGATATAACAAATAAGTTTTTGAAAGGTACACCAAGGTTT
GTGAAGATAGTAGAAGTTGGTCCGAGAGATGGATTGCAAAATGAGAAGAA
TACTGTACCCACGGGTGTAAAGGTGGAACTGATTCGCAGATTAGTGTCCT
CTGGGTTACCTGTTGTTGAGGCTACAAGTTTTGTCTCTCCAAAATGGGTT
CCTCAGCTAGCAGATGCAAGGGATGTAATGGAGGCCGTCCGTGATTTGGA
GGGAGCTAGATTGCCTGTTCTCACACCTAATTTAAGGGGTTTGAAGCTGC
CATTG
back to top