FC931780

Overview
NameFC931780
Unique NameFC931780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 72/208 (34.62%), Postives = 111/208 (53.37%), Query Frame = 3
Query:   84 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            ++I  + A+SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P +V  YPYF +       +L Y+LF
Sbjct:   25 SSIEIAGAESIGVCYGMLGNNLPNHWEVIQLYKSR-NIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFVDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 71/198 (35.86%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKV--LIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYF--GFKPQ--TLNYALF 686
            +GV YG   NNLPP  +V    K ++ I R++++D N   L A   +NI + + V N D+ +L     A+SWV  N+       +FRYI +GNEI   +     L   +LPAMR +  A+ +A L   ++VST   L ++  S PPS G FR    R     I+ F    +SP +   YPYF   + P+  +L YALF
Sbjct:   38 VGVCYGMQGNNLPPVSEVIALYK-KSNITRMRIYDPNRAVLEALRGSNIELILGVPNSDLQSLTNPSNAKSWVQKNVRGFWSSVLFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDV-RSYLDPIIGFLSSIRSPLLANIYPYFTYAYNPRDISLPYALF 233          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 72/200 (36.00%), Postives = 99/200 (49.50%), Query Frame = 3
Query:   99 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLL-PAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT--LNYALF 686
            + A  IGV YG IANNLP  Q V   L     I +++++        A   +NI + + V N D+ ALA     Q WV +NI  H P   F+YI +GNE+    D    A  + PAM  + +AL +A L + ++VST   LG+L+ + PP    FR  Y   I   I+ F  +   P +   YPYFG       L YALF
Sbjct:   21 TGAQPIGVCYGKIANNLPSDQDVIK-LYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALANPSKRQGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFRDEYKSFI-NPIIGFLSRHNLPLLANIYPYFGHADDNVPLPYALF 218          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 3
Query:  105 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALFNXNAA 701
            A SIGV YG  ANNLP  Q V N L     I ++++++ +     A   +NI + + V   D+ +L     A  WV +NI+ H P   F+YI +GNE+   ++      + PAM+ + +AL AA L   ++VST    GIL+ + PP    FR  ++  I   I++F  Q   P +   YPYFG    T    L+YALF    A
Sbjct:   29 AQSIGVCYGKHANNLPSDQDVIN-LYNANGIRKMRIYNPDTNVFNALRGSNIEIILDVPLQDLQSLTDPSRANGWVQDNIINHFPDVKFKYIAVGNEVSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFI-NPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEA 230          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 3
Query:   84 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            ++I  + A SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P +V  YPYF +       +L Y+LF
Sbjct:   25 SSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSR-NIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFVDAIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 3
Query:   84 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            ++I  + A SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P +V  YPYF +       +L Y+LF
Sbjct:   26 SSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSR-NIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 231          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 72/208 (34.62%), Postives = 109/208 (52.40%), Query Frame = 3
Query:   84 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            + I  + A SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P +V  YPYF +       +L Y+LF
Sbjct:   25 STIEIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSR-NIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 67/196 (34.18%), Postives = 101/196 (51.53%), Query Frame = 3
Query:  117 GVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGF----KPQTLNYALF 686
            GV YG + NNLP PQ+V   L  Q  I R++++  +PE L A   +NI + + + N ++  LA     A  WV +NI  +     FRY+ +GNE+    +      L+PA+  ++ A+  A L + V+VST    G L+ S PPS G F+  Y       ++ F     +P MV  Y YF +    K  +L+YALF
Sbjct:   35 GVCYGRLGNNLPTPQEVVA-LYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIKNYANNVRFRYVSVGNEV--KPEHSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGALAESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALF 227          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 65/198 (32.83%), Postives = 105/198 (53.03%), Query Frame = 3
Query:  111 SIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPA--LAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            +IGV YG +ANNLPP  +V    ++   +  ++++ A+ + L A   + I + + VG  D+ A   A    A +WV +N+ P++P    +YI  GNE+     +    +++PAMR L +AL A  L +++VST      ++ + PPS G F + Y   + AR+L     T +P +   YPYF +K       LNYA F
Sbjct:    1 TIGVCYGVVANNLPPANEVVQLYRSNG-LTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVWGGDTQ----NIVPAMRNLGAALKAPGLGTIKVSTSIRFDAVTNTFPPSNGVFAQAYMTDV-ARLL---ASTGAPLLTNVYPYFAYKDNPRDIQLNYATF 189          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 69/209 (33.01%), Postives = 105/209 (50.24%), Query Frame = 3
Query:   99 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALFNXNAAFLI 710
            +  + IGVNYG + ++LP P +V    K     D V++F  +   L A  ++ + V +   N D+  LA     A SWV + + P      FRYI  GNE++      L+   LPAM+ L++AL AA L SV V+T  +  +L TS PPS G F +     +   I+     + +P +V  YPYF +        L+YAL + +AA  +
Sbjct:    2 AGVEGIGVNYGMMGSDLPSPDKVVALYKANNITD-VRIFHPDTNVLEALRNSGLGVVLGTLNSDLAPLASDASYAASWVHSYVQPFAGAVSFRYINAGNEVIPGESAALV---LPAMKNLEAALQAAGL-SVPVTTAMATSVLGTSYPPSQGTFSEAALPTV-GPIVSHLASSGTPLLVNVYPYFAYSADPSSVRLDYALLSSSAAVAV 204          
The following BLAST results are available for this feature:
BLAST of FC931780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E13B_NICPL2.869e-2234.62Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_HEVBR2.869e-2235.86Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13A_SOLLC2.869e-2236.00Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13G_TOBAC3.747e-2234.80Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13E_TOBAC3.747e-2234.62Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_TOBAC6.391e-2234.62Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13F_TOBAC8.347e-2234.62Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13A_SOYBN3.172e-2134.18Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E13A_HORVU5.410e-2132.83Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E13F_HORVU9.228e-2133.01Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]

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Properties
Property NameValue
Genbank descriptionC34201B04EF PostHarveN Citrus clementina cDNA clone C34201B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931780 ID=FC931780; Name=FC931780; organism=Citrus clementina; type=EST; length=712bp
GCTCCTTCGCTTCTCAAATCATGGCTGTTACTGTTACTAAACTCTCTCAA
TTCCTCCTCTTCCTCTTCCTCTCCCTGTCTTGCAACGCCATCACCCCCTC
CGCCGCTGACTCCATCGGAGTCAACTACGGCGCCATCGCCAACAACCTCC
CGCCACCTCAGCAAGTAGCCAATTTCCTCAAAACCCAAACCACCATAGAC
CGCGTCAAGCTCTTCGACGCCAACCCCGAATTCCTCCGCGCCTTCGCCCA
CACAAACATCCCCGTCACCGTCACAGTCGGCAACGGCGACATACCTGCCC
TCGCAAAACTCCCCGCCGCCCAGTCCTGGGTCGCTAACAACATCCTGCCG
CATCACCCCCAGACCATCTTCAGATACATCGTCCTCGGCAACGAAATCTT
GGCCACGTCGGATAAAGTCCTCATCGCTTCTCTCCTGCCCGCCATGAGAA
CTCTTAAATCAGCTCTCGATGCTGCCAATCTGAGCAGCGTCCAGGTGTCG
ACACCTCATTCCCTGGGGATTTTATCAACCTCTGAGCCGCCGAGTACCGG
AAGGTTCCGTAAAGGTTACGATAGGCTTATCTTTGCTAGGATTCTCGAGT
TCCACAGACAGACTAAATCCCCGTTTATGGTTTACCCCTACCCGTATTTT
GGGTTCAAGCCTCAGACGCTCAACTACGCTTTGTTTAACCNAAACGCGGC
GTTTTTGATCCT
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