FC931780

Overview
NameFC931780
Unique NameFC931780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 66/197 (33.50%), Postives = 108/197 (54.82%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALF 686
            IGVN G   +++P P QV   LK Q  I  ++L++A+P  L A A+T I V +++ N  +  + +  + A +WV  N++ H+P T+   + +G+E+L TS       L+ A++ + +AL +ANL   ++VSTP S  ++    PPS   F +  + +I   +L F + T S  MV  YPY  +        L+YALF
Sbjct:   32 IGVNIGTDLSDMPHPTQVVALLKAQE-IRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVL-TSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSLNAVI-VPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALF 225          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 67/198 (33.84%), Postives = 102/198 (51.52%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            +GV YG + NNLP   +V    K++  I R++L+D N   L A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L +  +PA+  +  A+  A L + ++VST   + ++  S PPS G FR    R     I+ F R T++P +V  YPYF +       +L YALF
Sbjct:   27 LGVCYGMMGNNLPSHSEVIQLYKSRN-IGRLRLYDPNQGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 222          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 67/198 (33.84%), Postives = 102/198 (51.52%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            +GV YG + NNLP   +V    K++  I R++L+D N   L A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L +  +PA+  +  A+  A L + ++VST   + ++  S PPS G FR    R     I+ F R T++P +V  YPYF +       +L YALF
Sbjct:    1 LGVCYGMMGNNLPSHSEVIQLYKSRN-IGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 196          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 66/198 (33.33%), Postives = 100/198 (50.51%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIAS-LLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGF----KPQTLNYALF 686
            IGV YG + NNLP   +V N  ++   I R++L+D N   L+A  ++ I + + V N D+  LA     A+ WV  N+L   P    +YI +GNE+         A  +LPA++ +  A+ A  L   ++VST   + ++  S PPS G FR G  R     I+ +     +P  V  YPYF +    +  +L YALF
Sbjct:    2 IGVCYGMMGNNLPSANEVINLYRSNN-IRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWYAQYVLPAVQNVYQAVRAQGLHDQIKVSTAIDMTLIGNSYPPSQGSFR-GDVRSYLDPIIGYLLYASAPLHVNVYPYFSYSGNPRDISLPYALF 197          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 67/199 (33.67%), Postives = 101/199 (50.75%), Query Frame = 3
Query:  105 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALF 686
            A  IGV YG + + LP P  V    K Q  I R++L+  +P  L A   ++I + + V + D+  LA     A  WV  N+  +     FRYI +GNE+  +    +   LL AM+ +++A+  A L  V+VST  +    + + PPS GRFR  Y +     ++ F    +SP +V  YPYF +   T    L+YALF
Sbjct:   29 AGQIGVCYGMLGDTLPSPSDVVALYKQQN-IQRMRLYGPDPGALAALRGSDIELILDVPSSDLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEVKPS----VGGFLLQAMQNIENAVSGAGL-EVKVSTAIATDTTTDTSPPSQGRFRDEY-KSFLEPVIGFLASKQSPLLVNLYPYFSYMGDTANIHLDYALF 220          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 67/198 (33.84%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            IGV YG + NNLP   +V    K++  I R++L+D N   L A   +NI V + + N D+  ++  +  A+ WV  N+    P    +YI +GNEI   T    L    +PA+  +  A+  A L + ++VST   + ++  S PPS G FR    R     I+ F R T++P +V  YPYF +       +L YALF
Sbjct:   27 IGVCYGMMGNNLPSHSEVIQLYKSRN-IRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 222          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 66/196 (33.67%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  117 GVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSD-KVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT---LNYALF 686
            GV YG   N LP P  V + L  +  I R++++D +   L A   +NI + + V N D+  +A   A A +WV NN+  ++    FRYI +GNE+   ++    +  LL AMR +++A+  A L + ++VST    G+ + + PPS GRF+    R     I+ F    ++P +V  YPYF         L YALF
Sbjct:   27 GVCYGRQGNGLPSPADVVS-LCNRNNIRRMRIYDPDQPTLEALRGSNIELMLGVPNPDLENVAASQANADTWVQNNVR-NYGNVKFRYIAVGNEVSPLNENSKYVPVLLNAMRNIQTAISGAGLGNQIKVSTAIETGLTTDTSPPSNGRFKDDV-RQFIEPIINFLVTNRAPLLVNLYPYFAIANNADIKLEYALF 219          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 65/196 (33.16%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  117 GVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGD-IPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ-----TLNYA 680
            GV YG + +NLP    V    K++  I  +++++ + E L A   + I + + VG  D +  L + P+ A  WV +N+  ++P  + RYI +GNE+ A    +    +L AM+ + +AL +ANL SS++VST     +++ S PPS+G FR     +  AR L+    T +PF+   YPYF ++        LNYA
Sbjct:    6 GVCYGMVGDNLPSRSDVVQLYKSRN-IHAMRIYNPDQEALTALRGSGIFLILDVGGVDEVRRLGRDPSYAAGWVRSNVQAYYPDVLIRYIAVGNEVPAGDTGI----ILLAMQNVHNALASANLSSSIKVSTAVRFDVITNSFPPSSGVFRDPSGLVPIARFLD---STGAPFLANVYPYFAYRDDRGQNIRLNYA 193          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 66/188 (35.11%), Postives = 102/188 (54.26%), Query Frame = 3
Query:  102 AADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLP-AAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFAR-ILEFHRQTKSPFMVYPYPYFGFK 659
            A  SIGV  G + NNLP P  V    +++  ID +++++   + L A + T I V + VG   +P+LA  P AA +WV  N+    P   FRYI + NE++ ++ +   +++LPAMR ++ AL AA  S ++VST     + + + PPS G      D+  F R IL F  +   P +   YPYF +K
Sbjct:   22 AVHSIGVCNGVLGNNLPAPSDVVTLYRSK-RIDAMRIYEPESKVLTALSGTGIAVLMDVGPA-LPSLASSPSAAAAWVKANV-SSFPGVSFRYIAVRNEVMDSAGQ---STILPAMRNVQRALAAAG-SPIKVSTSVRFDVFNNTSPPSNGVLA---DKSGFLRPILNFLARPARPLLANVYPYFAYK 199          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 63/206 (30.58%), Postives = 100/206 (48.54%), Query Frame = 3
Query:   90 ITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIAS-LLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGF----KPQTLNYALF 686
            + P+    IG+ YG + NNLPP  +V    K    I R++L+D N   L A   + I + + + N D+  LA    +A+ WV  N+L  +P    +YI +GNE+        +A  +LPA + +  A+ A  L   ++V+T   + ++  S PPS G FR    R      + +     +P +V  YPYF      +  +L YALF
Sbjct:   26 LIPTTDAQIGICYGMMGNNLPPANEVIALYKANN-IKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLHDQIKVTTAIDMTLIGNSFPPSKGSFRSDV-RSYLDPFIGYLVYAGAPLLVNVYPYFSHIGNPRDISLPYALF 229          
The following BLAST results are available for this feature:
BLAST of FC931780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E132_ARATH2.685e-2033.50Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E132_SOLTU1.333e-1933.84Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E131_SOLTU1.740e-1933.84Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13B_PHAVU2.969e-1933.33Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13A_ARATH2.969e-1933.67Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_SOLLC5.064e-1933.84Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E13H_TOBAC6.614e-1933.67Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13E_HORVU6.614e-1933.16Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E13C_HORVU6.614e-1935.11Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E13B_PEA8.638e-1930.58Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionC34201B04EF PostHarveN Citrus clementina cDNA clone C34201B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931780 ID=FC931780; Name=FC931780; organism=Citrus clementina; type=EST; length=712bp
GCTCCTTCGCTTCTCAAATCATGGCTGTTACTGTTACTAAACTCTCTCAA
TTCCTCCTCTTCCTCTTCCTCTCCCTGTCTTGCAACGCCATCACCCCCTC
CGCCGCTGACTCCATCGGAGTCAACTACGGCGCCATCGCCAACAACCTCC
CGCCACCTCAGCAAGTAGCCAATTTCCTCAAAACCCAAACCACCATAGAC
CGCGTCAAGCTCTTCGACGCCAACCCCGAATTCCTCCGCGCCTTCGCCCA
CACAAACATCCCCGTCACCGTCACAGTCGGCAACGGCGACATACCTGCCC
TCGCAAAACTCCCCGCCGCCCAGTCCTGGGTCGCTAACAACATCCTGCCG
CATCACCCCCAGACCATCTTCAGATACATCGTCCTCGGCAACGAAATCTT
GGCCACGTCGGATAAAGTCCTCATCGCTTCTCTCCTGCCCGCCATGAGAA
CTCTTAAATCAGCTCTCGATGCTGCCAATCTGAGCAGCGTCCAGGTGTCG
ACACCTCATTCCCTGGGGATTTTATCAACCTCTGAGCCGCCGAGTACCGG
AAGGTTCCGTAAAGGTTACGATAGGCTTATCTTTGCTAGGATTCTCGAGT
TCCACAGACAGACTAAATCCCCGTTTATGGTTTACCCCTACCCGTATTTT
GGGTTCAAGCCTCAGACGCTCAACTACGCTTTGTTTAACCNAAACGCGGC
GTTTTTGATCCT
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