FC931780

Overview
NameFC931780
Unique NameFC931780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 72/213 (33.80%), Postives = 109/213 (51.17%), Query Frame = 3
Query:   87 AITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPH--HPQTIFRYIVLGNE-ILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEP-PSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ---TLNYALFNXNA 698
            A+    A SIG N+G  A++  PP  V   L+ +  I +VKLFDA  + LRA   + I V V + N  +  LA  L AA+ WVA N+  H        RY+ +GNE  L+T +   +++  PA+R ++ A+  A L + V+V+ P +  +  +S   PS G FR    R +   I++F  +   PF V  YPY          ++YA F+ NA
Sbjct:   13 ALLCQRASSIGANWGTQASHPLPPDIVVRMLR-ENGIQKVKLFDAEYDTLRALGKSGIEVMVGIPNEMLATLASSLKAAEKWVAKNVSTHISTDNVNIRYVAVGNEPFLSTYNGSYLSTTFPALRNIQIAIIKAGLQNQVKVTCPLNADVYDSSTTFPSGGDFRANI-RDLMITIVKFLSENGGPFTVNIYPYISLYTNPDFPVDYAFFDGNA 223          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 3
Query:  204 VKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIAS-LLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALF 686
            ++++D N + L+A   + I + + V N  + +LA    AA +WV NN++ +     FRYI +GNE+L T      A  +LPAM+ ++SA+ +A L   ++VST     +L TS PPS G F       I   I+ F  +  SP +   YPYF +   T    L+YALF
Sbjct:    1 MRIYDPNSDTLQALKGSGIELILDVPNTSLQSLASDASAASTWVQNNVVNYASDVKFRYIAVGNEVLPTGSNAQYAQYVLPAMKNVQSAITSAGLQGQIKVSTATYSSVLGTSYPPSAGSFSSDASSFI-NPIISFLAENGSPLLANIYPYFSYTGDTQNIRLDYALF 167          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 72/207 (34.78%), Postives = 105/207 (50.72%), Query Frame = 3
Query:   87 AITPSAADSIGVNYGAIANNLPPPQQVANFLKTQ-TTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLP-AAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            A  P+   SIGV YG   +NLPP   V    ++    + R+   DANP  L A + T+I + + V N D+ +LA  P AA +WV +N+     ++  RYI +GNE+          S+LPAM+ L +AL  A L  S++VST     + +   PPS G F +GY     A   ++ + T +P +   YPYF +        L YALF
Sbjct:   21 AAIPTGVQSIGVCYGVNGDNLPPASDVVQLYQSNGINLLRIYFPDANP--LNALSGTSIGLIMDVPNTDLASLASDPSAAAAWVQSNVQASR-RSACRYIAVGNEVSGGD----TGSILPAMQNLNAALANAGLGGSIKVSTAVQSDV-TQGFPPSQGTFSQGY----MAPSRQYLQSTGAPLLSNVYPYFSYVGNPAQIDLKYALF 215          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 67/214 (31.31%), Postives = 116/214 (54.21%), Query Frame = 3
Query:   87 AITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPAL-AKLPAAQSWVANNILPHH---PQTIFRYIVLGNE-ILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSL-GILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGF---KPQTLNYALFNXNA 698
            ++T +   ++G+N+G  A++  PP +V   LK+   + +VKLFDA+P+ LRA + +NI VT+ + N  + +L A +  A+SWV +N+  +     +    Y+ +G E  L +        ++ A   +++AL  ANL++ V+V  P S    LS S  PS+G FR   ++ +   +L F  +  SPF V   P+  F   K  +L+++LF   A
Sbjct:   17 SLTGTTVRAVGINWGTEASHPLPPSKVVELLKSNGIV-KVKLFDADPKVLRALSGSNIGVTIGIQNSMLKSLNASVKVAESWVHDNVTRYFNGGNRVRIEYVAVGEEPFLQSYGNQYKPFVIGAAMNIQNALVKANLANEVKVVVPSSFDSFLSESGRPSSGHFRADLNKTMI-ELLSFLTKHHSPFFVTISPFLSFHQNKNISLDFSLFKETA 228          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 63/189 (33.33%), Postives = 96/189 (50.79%), Query Frame = 3
Query:  141 NNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            NNLP   +V    K++  I R++L+D N   L A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L +  +PA+  +  A+  A L + ++VST   + ++  S PPS G FR    R     I+ F R T++P +V  YPYF +       +L YALF
Sbjct:    1 NNLPSHSEVIQLYKSRN-IGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 187          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 61/186 (32.80%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  108 DSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPHHPQ--TIFRYIVLGNE-ILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGIL-STSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPY 647
            + IGVN+G+ A +  PP  V   L+ +  I +VKLF+A+   L+A + T I V V + N  +  LA  + AA+ WV+ N+  H        RY+ +GNE  L   +       LPA++ ++SA+  A L++ V+V+ P +  +  S S  PS G FR    R +   I++F     +PF +  YP+
Sbjct:   25 EGIGVNWGSQARHPLPPATVVRLLR-ENGIQKVKLFEADSAILKALSRTGIQVMVGIPNDLLAPLAGSVAAAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLKAFNGTFEGITLPALQNIQSAIIKAGLATQVKVTVPLNADVYQSASNLPSDGDFRPEI-RDLMLNIVKFLSDNGAPFTINIYPF 208          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 59/204 (28.92%), Postives = 104/204 (50.98%), Query Frame = 3
Query:  108 DSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHH--PQTIFRYIVLGNE-ILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILST--SEP-PSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPY---FGFKPQTLNYALFN 689
            + +GVN+G +A +  PP+ V   LK    I++VKLFDA+   + A A + + V V + N  +  +     A+ WV  N+  ++        ++ +GNE  L + +   I    PA+  +++AL+ A L +SV+ + P +  +  +  S P PS GRFR      +  +I++F  +  +P  +  YP+   +G     LNYA F+
Sbjct:   23 NGLGVNWGTMATHKLPPKTVVQMLK-DNNINKVKLFDADETTMGALAGSGLEVMVAIPNDQLKVMTSYDRAKDWVRKNVTRYNFDGGVNITFVAVGNEPFLKSYNGSFINLTFPALANIQNALNEAGLGNSVKATVPLNADVYDSPASNPVPSAGRFRPDIIGQM-TQIVDFLGKNNAPITINIYPFLSLYGNDDFPLNYAFFD 224          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13I_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-N (Fragment) OS=Nicotiana tabacum GN=PRN PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 53/159 (33.33%), Postives = 80/159 (50.31%), Query Frame = 3
Query:  240 AFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALFNXNAA 701
            A   +NI + + V   D+ +L     A  WV +NI+ H P   F+YI +GN++   ++      + PAM+ + +AL AA L   ++VST    GIL+ + PP    FR  ++  I   I++F  Q   P +   YPYFG    T    L+YALF    A
Sbjct:    5 ALRGSNIEIILDVPLQDLQSLTDPSRANGWVQDNIINHFPDVKFKYIAVGNKVSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFI-NPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEA 162          
The following BLAST results are available for this feature:
BLAST of FC931780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E136_ARATH1.128e-1833.80Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E13B_VITVI1.924e-1835.12Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E13B_MAIZE7.312e-1834.78Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E139_ARATH1.247e-1731.31Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E133_SOLTU4.740e-1733.33Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E135_ARATH3.397e-1532.80Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E138_ARATH1.686e-1428.92Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E13I_TOBAC3.755e-1433.33Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]

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Properties
Property NameValue
Genbank descriptionC34201B04EF PostHarveN Citrus clementina cDNA clone C34201B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931780 ID=FC931780; Name=FC931780; organism=Citrus clementina; type=EST; length=712bp
GCTCCTTCGCTTCTCAAATCATGGCTGTTACTGTTACTAAACTCTCTCAA
TTCCTCCTCTTCCTCTTCCTCTCCCTGTCTTGCAACGCCATCACCCCCTC
CGCCGCTGACTCCATCGGAGTCAACTACGGCGCCATCGCCAACAACCTCC
CGCCACCTCAGCAAGTAGCCAATTTCCTCAAAACCCAAACCACCATAGAC
CGCGTCAAGCTCTTCGACGCCAACCCCGAATTCCTCCGCGCCTTCGCCCA
CACAAACATCCCCGTCACCGTCACAGTCGGCAACGGCGACATACCTGCCC
TCGCAAAACTCCCCGCCGCCCAGTCCTGGGTCGCTAACAACATCCTGCCG
CATCACCCCCAGACCATCTTCAGATACATCGTCCTCGGCAACGAAATCTT
GGCCACGTCGGATAAAGTCCTCATCGCTTCTCTCCTGCCCGCCATGAGAA
CTCTTAAATCAGCTCTCGATGCTGCCAATCTGAGCAGCGTCCAGGTGTCG
ACACCTCATTCCCTGGGGATTTTATCAACCTCTGAGCCGCCGAGTACCGG
AAGGTTCCGTAAAGGTTACGATAGGCTTATCTTTGCTAGGATTCTCGAGT
TCCACAGACAGACTAAATCCCCGTTTATGGTTTACCCCTACCCGTATTTT
GGGTTCAAGCCTCAGACGCTCAACTACGCTTTGTTTAACCNAAACGCGGC
GTTTTTGATCCT
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