FC931783

Overview
NameFC931783
Unique NameFC931783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15393 contig Ccv1_Contig15393:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 109/164 (66.46%), Postives = 138/164 (84.15%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575
            V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKV +GIPPP DKKKR+VVP AL+V+RL+P RK+  +GRL+HEVGWKYQ V + LEE+RK K+K +Y
Sbjct:    6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHY 168          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 109/164 (66.46%), Postives = 138/164 (84.15%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575
            V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKV +GIPPP DKKKR+VVP AL+V+RL+P RK+  +GRL+HEVGWKYQ V + LEE+RK K+K +Y
Sbjct:    6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.863e-59
Identity = 110/167 (65.87%), Postives = 134/167 (80.24%), Query Frame = 3
Query:   66 MSSFES-VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKS 563
            M+ F +  +VIDG+GHLLGRLA+ +AK LL G K+VVVRCE +NISG FFR KLK+ ++LRK    NP RG PFHFRAPS+IL+K +RGM+PHKT RG +AL RL+  +G PPP D ++RVVVP ALRV  L+PGRKYC VGRLSHEVGWKY+DVV +LE +RKVKS
Sbjct:    1 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARG-PFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKS 166          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.739e-59
Identity = 108/164 (65.85%), Postives = 138/164 (84.15%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575
            V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    +P+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKV +GIPPP DKKKR+VVP AL+V+RL+P RK+  +GRL+HEVGWKYQ V + LEE+RK K+K +Y
Sbjct:    6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.088e-58
Identity = 111/158 (70.25%), Postives = 126/158 (79.75%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVK 560
            VVIDG+GHLLGRLAS VAK LL G K+ VVRCE LN+SG F+R K+K+ AYLRK    NP RG PFHFRAPSRI YKA+RGM+PHKT RG AAL RL+V +GIP P DK++RVVVP A+RVL LR  RKYC VGRLSHEVGW YQDV+  LE +RK K
Sbjct:    9 VVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARG-PFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAK 165          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.399e-58
Identity = 111/174 (63.79%), Postives = 136/174 (78.16%), Query Frame = 3
Query:   66 MSSFES-VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKS--KAYYE 578
            M+ F +  +VIDG+GHLLGRLA+ +AK LL G K+VVVRCE LNISG FFR KLK+ ++LRK    NP RG PFHFRAPS+IL+K +RGM+PHKT RG  AL RL+  +G PPP D ++RVVVP ALRV  L+PGRKYC VGRLSHEVGWKY++VV +LE++RK K+  K  YE
Sbjct:    1 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARG-PFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYE 173          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.797e-53
Identity = 98/155 (63.23%), Postives = 126/155 (81.29%), Query Frame = 3
Query:  111 LLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575
            LLGRLA+ VA ++L G K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AALERLKV +G+PPP DK+KR+VVP AL+++RL+P RK+  +GRL+HEVGWKYQ + + LEE+RK K+K  Y
Sbjct:    1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRY 154          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52
Identity = 97/164 (59.15%), Postives = 127/164 (77.44%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578
            VV+D + H+LGRLAS +AK+LL+GQ++VVVRCE + +SG   R K+KY  +LRK     P+ G P HFRAPSRIL++ IRGM+PHKT RGAAAL  L+  EG+PPP D+KKR+V+P AL+VLRL+PG KYC +GRLS EVGW + D ++ LEE+RK K++  YE
Sbjct:   12 VVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHG-PIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYE 174          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52
Identity = 98/164 (59.76%), Postives = 124/164 (75.61%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578
            VV+DG+ H+LGRLAS  AK+LLNGQ++VVVRCE + +SG   R K+KY  +LRK     P+ G P HFRAPS+I ++ +RGM+PHKT RGAAAL RLKV EGIPPP DK KR+V+P AL+VLRL+ G KYC +GRLS EVGW + D +  LE +RK +S+  YE
Sbjct:   12 VVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYE 174          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.862e-52
Identity = 96/164 (58.54%), Postives = 123/164 (75.00%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578
            VV+D + H+ GRLAS +AK+LLNGQ +VVVRCE + +SG   R K+KY  +LRK     P+ G P HFRAPS+I ++ +RGM+PHKT RGAAAL RLKV EG+PPP DK KR+V+P AL+VLRL+ G KYC +GRLS EVGW + D +  LE +RK +S+A YE
Sbjct:   12 VVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYE 174          
The following BLAST results are available for this feature:
BLAST of FC931783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL13A_MACFA9.840e-6066.4660S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN9.840e-6066.4660S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL13A_SPOFR2.863e-5965.8760S ribosomal protein L13a OS=Spodoptera frugiperd... [more]
RL13A_PONAB3.739e-5965.8560S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_DROME1.088e-5870.2560S ribosomal protein L13a OS=Drosophila melanogas... [more]
RL13A_CHOPR5.399e-5863.7960S ribosomal protein L13a OS=Choristoneura parall... [more]
RL13A_SALTR1.797e-5363.2360S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL13A_PICMA1.522e-5259.1560S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
R13A3_ARATH1.522e-5259.7660S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A2_ARATH9.862e-5258.5460S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC34201B07EF PostHarveN Citrus clementina cDNA clone C34201B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931783 ID=FC931783; Name=FC931783; organism=Citrus clementina; type=EST; length=701bp
GGGACTTGACACCCACGACAACAACCGCCGACAACATCCATCCCACGGGA
CATTAGATCACCAGGATGTCCTCCTTCGAATCAGTGGTCGTCATCGACGG
CAAAGGACACCTCCTCGGTCGTCTGGCCAGCACTGTCGCCAAGCAGCTGC
TCAACGGTCAGAAGATCGTCGTCGTGAGATGTGAGGCTCTCAACATCTCC
GGCGAGTTCTTCCGCGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGAT
GACTCGTTTCAACCCCACCCGTGGTGGTCCCTTCCACTTCCGCGCTCCTT
CCCGTATCCTCTACAAGGCCATCCGCGGCATGATGCCCCACAAGACCGCC
CGTGGTGCCGCCGCTCTGGAGCGCCTCAAGGTCCTCGAGGGTATTCCCCC
TCCCTGCGACAAGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTCCGTGTCC
TGCGTCTCCGCCCCGGTCGCAAGTACTGCACCGTCGGCCGTCTCAGCCAC
GAGGTTGGCTGGAAGTACCAGGATGTTGTTTCCAGACTCGAGGAGCGCAG
AAAGGTCAAGAGCAAGGCCTACTACGAGCGCAAGAAGGCCGCTCGCCGTG
TCCTTGCCAAGGCCGAGCAGGGAGCGAACGTGGACAGCAAGACCAAGACC
CAGCTTGCTCAGTTTGGCTACTAGATACCTTTAGCGTGGCTGGTTGTTGT
G
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