FC931783
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3) HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60 Identity = 109/164 (66.46%), Postives = 138/164 (84.15%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575 V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKV +GIPPP DKKKR+VVP AL+V+RL+P RK+ +GRL+HEVGWKYQ V + LEE+RK K+K +Y Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHY 168
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2) HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60 Identity = 109/164 (66.46%), Postives = 138/164 (84.15%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575 V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKV +GIPPP DKKKR+VVP AL+V+RL+P RK+ +GRL+HEVGWKYQ V + LEE+RK K+K +Y Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 2.863e-59 Identity = 110/167 (65.87%), Postives = 134/167 (80.24%), Query Frame = 3 Query: 66 MSSFES-VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKS 563 M+ F + +VIDG+GHLLGRLA+ +AK LL G K+VVVRCE +NISG FFR KLK+ ++LRK NP RG PFHFRAPS+IL+K +RGM+PHKT RG +AL RL+ +G PPP D ++RVVVP ALRV L+PGRKYC VGRLSHEVGWKY+DVV +LE +RKVKS Sbjct: 1 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARG-PFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKS 166
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3) HSP 1 Score: 228.024 bits (580), Expect = 3.739e-59 Identity = 108/164 (65.85%), Postives = 138/164 (84.15%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575 V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK +P+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKV +GIPPP DKKKR+VVP AL+V+RL+P RK+ +GRL+HEVGWKYQ V + LEE+RK K+K +Y Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.088e-58 Identity = 111/158 (70.25%), Postives = 126/158 (79.75%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVK 560 VVIDG+GHLLGRLAS VAK LL G K+ VVRCE LN+SG F+R K+K+ AYLRK NP RG PFHFRAPSRI YKA+RGM+PHKT RG AAL RL+V +GIP P DK++RVVVP A+RVL LR RKYC VGRLSHEVGW YQDV+ LE +RK K Sbjct: 9 VVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARG-PFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAK 165
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 5.399e-58 Identity = 111/174 (63.79%), Postives = 136/174 (78.16%), Query Frame = 3 Query: 66 MSSFES-VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKS--KAYYE 578 M+ F + +VIDG+GHLLGRLA+ +AK LL G K+VVVRCE LNISG FFR KLK+ ++LRK NP RG PFHFRAPS+IL+K +RGM+PHKT RG AL RL+ +G PPP D ++RVVVP ALRV L+PGRKYC VGRLSHEVGWKY++VV +LE++RK K+ K YE Sbjct: 1 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARG-PFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYE 173
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.797e-53 Identity = 98/155 (63.23%), Postives = 126/155 (81.29%), Query Frame = 3 Query: 111 LLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575 LLGRLA+ VA ++L G K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AALERLKV +G+PPP DK+KR+VVP AL+++RL+P RK+ +GRL+HEVGWKYQ + + LEE+RK K+K Y Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRY 154
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52 Identity = 97/164 (59.15%), Postives = 127/164 (77.44%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578 VV+D + H+LGRLAS +AK+LL+GQ++VVVRCE + +SG R K+KY +LRK P+ G P HFRAPSRIL++ IRGM+PHKT RGAAAL L+ EG+PPP D+KKR+V+P AL+VLRL+PG KYC +GRLS EVGW + D ++ LEE+RK K++ YE Sbjct: 12 VVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHG-PIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYE 174
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52 Identity = 98/164 (59.76%), Postives = 124/164 (75.61%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578 VV+DG+ H+LGRLAS AK+LLNGQ++VVVRCE + +SG R K+KY +LRK P+ G P HFRAPS+I ++ +RGM+PHKT RGAAAL RLKV EGIPPP DK KR+V+P AL+VLRL+ G KYC +GRLS EVGW + D + LE +RK +S+ YE Sbjct: 12 VVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYE 174
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 9.862e-52 Identity = 96/164 (58.54%), Postives = 123/164 (75.00%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578 VV+D + H+ GRLAS +AK+LLNGQ +VVVRCE + +SG R K+KY +LRK P+ G P HFRAPS+I ++ +RGM+PHKT RGAAAL RLKV EG+PPP DK KR+V+P AL+VLRL+ G KYC +GRLS EVGW + D + LE +RK +S+A YE Sbjct: 12 VVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYE 174 The following BLAST results are available for this feature:
BLAST of FC931783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931783 ID=FC931783; Name=FC931783; organism=Citrus clementina; type=EST; length=701bpback to top |