FC931783
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18 Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 3 Query: 90 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518 +I+ +G +LGRLAS VAK LL G+++V+V E I+G E AK K LR TR NP R GPF+ + I+ + +RGM+P KT RG A +RLKV G+P + K+ + +A P KY TVG ++ +G K+ Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELR--TRTNPRR-GPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEAHMSRLATP--KYVTVGEVAKFLGGKF 142
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18 Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 3 Query: 90 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 518 +I+ +G +LGRLAS VAK LL G+++V+V E I+G E +K K LR +T NP RG PF+ + I+ + IRGM+P KT RG A +RLKV GIP K+ + +A V RL RP KY TVG ++ +G K+ Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18 Identity = 52/146 (35.62%), Postives = 85/146 (58.22%), Query Frame = 3 Query: 78 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 515 + VID GH+LGRL+S +AK+LLNG++IVVV E I+G+ + + + Y K R + + GP+ R P RI + +RGM+P K++RG A RL+V G+P ++ + AL + ++ KY T+ +S +G++ Sbjct: 14 DDFTVIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKEK-GPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGFR 154
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 63/146 (43.15%), Postives = 85/146 (58.22%), Query Frame = 3 Query: 90 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 518 +I+ G +LGRLAS VAK LL G+++V+V E I+G E +K K LR +T NP RG PF+ + I+ + IRGM+P KT RG A RLKV GIP K+ + +A V RL RP KY TVG ++ +G K+ Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_SULSO (50S ribosomal protein L13P OS=Sulfolobus solfataricus GN=rpl13p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17 Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 3 Query: 78 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGW 512 E VV+I+ +G +LGR+AS V + L G+K+++V E ISGE R Y L T FNP R G R+P I+ + IRGM+P K+++G L+ +K+ G+P + ++ + P + V RL+ KY TV +S E+GW Sbjct: 7 EQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS-DVSRLK--GKYVTVEVVSKELGW 147
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 50/146 (34.25%), Postives = 85/146 (58.22%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQ 521 +++I+G+GH+LGRLAS V+K+LL G++++V+ E + I+G A KY + + + NP R GP + R P I + +RGM+P+K ++G A + LK GIP ++ V +P A + +K +G +S +G + Q Sbjct: 3 LMIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA----KAGSIKKGMELGEISELLGARLQ 144
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 62/146 (42.47%), Postives = 86/146 (58.90%), Query Frame = 3 Query: 90 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 518 +I+ +G +LGRLAS VAK LL G+++V+V E I+G + K K LR +T NP R GPF+ + I+ + IRGM+P KT RG A +RLKV GIP K+ + +A V RL RP KY TVG ++ +G K+ Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLT--NPRR-GPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METBU (50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl13p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17 Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518 + VID G ++GRLAS VAK LL+G+++ +V E ISG +Y TR GP+ R P RIL + +RGM+P+K ARG A+ RLKV GIP + V V + + RL KY T+G +S ++G K+ Sbjct: 1 MTVIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEYDVIRNMGTR----EFGPYFPRRPDRILKRTVRGMLPYKRARGKDAMGRLKVYVGIPYEYQDAEFVSV-EGAEMTRL-SSNKYVTIGDVSRQLGSKF 139
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METHJ (50S ribosomal protein L13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl13p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17 Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518 VVVIDG G LLGRLAS VAK+ L G++I VV E ISG R Y ++ +R GGPF R P IL + IRGM+P+K RG A++R+++ G+P + + A + P + T+G +S +G KY Sbjct: 2 VVVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNYKQKRQRGSR----EGGPFFPRRPDHILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKKRLGNP--SHVTLGAVSTFLGAKY 140
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METST (50S ribosomal protein L13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl13p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17 Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQA 440 V +IDG+G +LGRLASTV+K+LL+G++I ++ E + ISG KY + + + NP GP + R P I + +RGM+P++ A G AA + LKV GIP + ++ V V QA Sbjct: 2 VTIIDGEGLVLGRLASTVSKRLLDGEEITIINAEKIIISGNKDFIYAKYKQRVDRASISNPRDLGPKYPRRPDDIFRRTVRGMIPYRKAHGRAAYKNLKVNVGIPKELEGQEVVEVEQA 120 The following BLAST results are available for this feature:
BLAST of FC931783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931783 ID=FC931783; Name=FC931783; organism=Citrus clementina; type=EST; length=701bpback to top |