FC931783

Overview
NameFC931783
Unique NameFC931783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15393 contig Ccv1_Contig15393:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 3
Query:   90 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518
            +I+ +G +LGRLAS VAK LL G+++V+V  E   I+G  E   AK K    LR  TR NP R GPF+ +    I+ + +RGM+P KT RG  A +RLKV  G+P   + K+   + +A       P  KY TVG ++  +G K+
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELR--TRTNPRR-GPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEAHMSRLATP--KYVTVGEVAKFLGGKF 142          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 3
Query:   90 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 518
            +I+ +G +LGRLAS VAK LL G+++V+V  E   I+G  E   +K K    LR +T  NP RG PF+ +    I+ + IRGM+P KT RG  A +RLKV  GIP     K+   + +A  V RL RP  KY TVG ++  +G K+
Sbjct:    3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 52/146 (35.62%), Postives = 85/146 (58.22%), Query Frame = 3
Query:   78 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 515
            +   VID  GH+LGRL+S +AK+LLNG++IVVV  E   I+G+ +   + +  Y  K  R +  + GP+  R P RI  + +RGM+P K++RG  A  RL+V  G+P     ++   +  AL + ++    KY T+  +S  +G++
Sbjct:   14 DDFTVIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKEK-GPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGFR 154          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 63/146 (43.15%), Postives = 85/146 (58.22%), Query Frame = 3
Query:   90 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 518
            +I+  G +LGRLAS VAK LL G+++V+V  E   I+G  E   +K K    LR +T  NP RG PF+ +    I+ + IRGM+P KT RG  A  RLKV  GIP     K+   + +A  V RL RP  KY TVG ++  +G K+
Sbjct:    3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_SULSO (50S ribosomal protein L13P OS=Sulfolobus solfataricus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 3
Query:   78 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGW 512
            E VV+I+ +G +LGR+AS V + L  G+K+++V  E   ISGE  R    Y   L   T FNP R G    R+P  I+ + IRGM+P K+++G   L+ +K+  G+P   + ++ +  P +  V RL+   KY TV  +S E+GW
Sbjct:    7 EQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS-DVSRLK--GKYVTVEVVSKELGW 147          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 50/146 (34.25%), Postives = 85/146 (58.22%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQ 521
            +++I+G+GH+LGRLAS V+K+LL G++++V+  E + I+G    A  KY   + + +  NP R GP + R P  I  + +RGM+P+K ++G  A + LK   GIP     ++ V +P A    +    +K   +G +S  +G + Q
Sbjct:    3 LMIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA----KAGSIKKGMELGEISELLGARLQ 144          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 62/146 (42.47%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   90 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 518
            +I+ +G +LGRLAS VAK LL G+++V+V  E   I+G  +    K K    LR +T  NP R GPF+ +    I+ + IRGM+P KT RG  A +RLKV  GIP     K+   + +A  V RL RP  KY TVG ++  +G K+
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLT--NPRR-GPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METBU (50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518
            + VID  G ++GRLAS VAK LL+G+++ +V  E   ISG       +Y       TR      GP+  R P RIL + +RGM+P+K ARG  A+ RLKV  GIP      + V V +   + RL    KY T+G +S ++G K+
Sbjct:    1 MTVIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEYDVIRNMGTR----EFGPYFPRRPDRILKRTVRGMLPYKRARGKDAMGRLKVYVGIPYEYQDAEFVSV-EGAEMTRL-SSNKYVTIGDVSRQLGSKF 139          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METHJ (50S ribosomal protein L13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518
            VVVIDG G LLGRLAS VAK+ L G++I VV  E   ISG   R    Y    ++ +R     GGPF  R P  IL + IRGM+P+K  RG  A++R+++  G+P     +    +  A +     P   + T+G +S  +G KY
Sbjct:    2 VVVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNYKQKRQRGSR----EGGPFFPRRPDHILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKKRLGNP--SHVTLGAVSTFLGAKY 140          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METST (50S ribosomal protein L13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQA 440
            V +IDG+G +LGRLASTV+K+LL+G++I ++  E + ISG       KY   + + +  NP   GP + R P  I  + +RGM+P++ A G AA + LKV  GIP   + ++ V V QA
Sbjct:    2 VTIIDGEGLVLGRLASTVSKRLLDGEEITIINAEKIIISGNKDFIYAKYKQRVDRASISNPRDLGPKYPRRPDDIFRRTVRGMIPYRKAHGRAAYKNLKVNVGIPKELEGQEVVEVEQA 120          
The following BLAST results are available for this feature:
BLAST of FC931783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL13_PYRKO5.462e-1840.6950S ribosomal protein L13P OS=Pyrococcus kodakarae... [more]
RL13_PYRAB5.462e-1843.1550S ribosomal protein L13P OS=Pyrococcus abyssi GN... [more]
RL13_ARCFU7.134e-1835.6250S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_PYRHO9.317e-1843.1550S ribosomal protein L13P OS=Pyrococcus horikoshi... [more]
RL13_SULSO1.217e-1737.9350S ribosomal protein L13P OS=Sulfolobus solfatari... [more]
RLSX_METTH2.076e-1734.25Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_PYRFU2.076e-1742.4750S ribosomal protein L13P OS=Pyrococcus furiosus ... [more]
RL13_METBU2.711e-1739.3150S ribosomal protein L13P OS=Methanococcoides bur... [more]
RL13_METHJ3.540e-1739.3150S ribosomal protein L13P OS=Methanospirillum hun... [more]
RL13_METST6.039e-1741.1850S ribosomal protein L13P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionC34201B07EF PostHarveN Citrus clementina cDNA clone C34201B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931783 ID=FC931783; Name=FC931783; organism=Citrus clementina; type=EST; length=701bp
GGGACTTGACACCCACGACAACAACCGCCGACAACATCCATCCCACGGGA
CATTAGATCACCAGGATGTCCTCCTTCGAATCAGTGGTCGTCATCGACGG
CAAAGGACACCTCCTCGGTCGTCTGGCCAGCACTGTCGCCAAGCAGCTGC
TCAACGGTCAGAAGATCGTCGTCGTGAGATGTGAGGCTCTCAACATCTCC
GGCGAGTTCTTCCGCGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGAT
GACTCGTTTCAACCCCACCCGTGGTGGTCCCTTCCACTTCCGCGCTCCTT
CCCGTATCCTCTACAAGGCCATCCGCGGCATGATGCCCCACAAGACCGCC
CGTGGTGCCGCCGCTCTGGAGCGCCTCAAGGTCCTCGAGGGTATTCCCCC
TCCCTGCGACAAGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTCCGTGTCC
TGCGTCTCCGCCCCGGTCGCAAGTACTGCACCGTCGGCCGTCTCAGCCAC
GAGGTTGGCTGGAAGTACCAGGATGTTGTTTCCAGACTCGAGGAGCGCAG
AAAGGTCAAGAGCAAGGCCTACTACGAGCGCAAGAAGGCCGCTCGCCGTG
TCCTTGCCAAGGCCGAGCAGGGAGCGAACGTGGACAGCAAGACCAAGACC
CAGCTTGCTCAGTTTGGCTACTAGATACCTTTAGCGTGGCTGGTTGTTGT
G
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