FC931783

Overview
NameFC931783
Unique NameFC931783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15393 contig Ccv1_Contig15393:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRAE (50S ribosomal protein L13P OS=Pyrobaculum aerophilum GN=rpl13p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 63/167 (37.72%), Postives = 95/167 (56.89%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVV---VPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVK 560
            V++D +GH+ GRLA+ +AK LL     +IVVV  E L I+G+    K+    + RK+    T +NP + GP   R P R+  + +RGM+P K+  G +AL+RL+V   IP    ++KR+V   VP+A   LRLRP  +Y T+     E  W+  D  +  + RR V+
Sbjct:   19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEWRTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIPIEIMQRKRLVLYEVPEA--KLRLRPLLQYTTL-----EEVWRSIDPEAWEKWRRAVE 175          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_THENV (50S ribosomal protein L13P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRV-LRLRPGRKYCTVGRLSHEV---GWKYQDVVSRLEERR 551
            VVI+ +GH+ GRLA+ +AK LL   G +IVVV  E L ++G+    K+    + RK+    T +NP + GP   R P R+  + +RGM+P +   G  AL+RL+V   +P     +KR+VV +     LR+RP  KY T+  +  +V    W+       L ++R
Sbjct:   17 VVINAEGHIAGRLATYIAKALLEKPGLRIVVVNAEKLVVTGD---EKMVVEWFKRKISEWGTHYNPEKAGPKIPRRPDRVFKRMVRGMLPKRAESGRRALKRLRVYVSVPMELLSRKRLVVYEVPPAKLRMRPLAKYVTLEEVWRQVDPAAWEQWKKAQELWQKR 178          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRIL (50S ribosomal protein L13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIP-PPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEE 545
            ++ID  GH+ GRLA+ VAK LL     +IVVV  E L I+G+    K+    + RK+    T +NP + GP   R P R+  + +RGM+P K  RG +AL+RL+V   IP    ++KK V+    L  L+++P  K+ T+  +   + +   +   R +E
Sbjct:   17 IIIDADGHIAGRLATYVAKALLERPSLRIVVVNAEKLVITGD---RKMVIEWFKRKISEWRTHYNPEKAGPKIPRRPDRVFKRIVRGMLPKKNMRGRSALKRLRVYMSIPLEMLNRKKLVLYEVPLAKLKVKPLAKFVTLEEVWRNIDFAAWEQWKRAQE 173          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 55/150 (36.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   78 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCD----KKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 515
            E   VID +  +LGRLAS VAK++L G++I V+  E   I+G+    K     +L+K+ R +P +G PF+ R P  I  + +RGM+P KT RG  A +RL+   G P   +    + +RV      R+  L     Y T+G LS E+G++
Sbjct:   13 EEWTVIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGKKNTIK---EEWLQKIQRGDPKKG-PFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADMSRLGHL----WYVTLGELSEELGYQ 154          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_AERPE (50S ribosomal protein L13P OS=Aeropyrum pernix GN=rpl13p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 515
            +V+DG G ++GRLAS VAK LL G ++ VV  E + +SG+       Y   +  +      +  P   R P R+   A+RGM+P   ARG  AL RL+V  G+P     ++ V  P+A      R    Y  +G ++ ++GWK
Sbjct:   11 IVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTVLGVKSHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVPDELKGREFVRFPEA---DASRLSSHYIELGAVARQLGWK 150          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METJA (50S ribosomal protein L13P OS=Methanocaldococcus jannaschii GN=rpl13p PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 53/145 (36.55%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518
            + VID +G +LGRLAS VAK++L G++IV+V  E + I+G        Y     K    NP R GP   R P  IL + IR M+P+K  +G  A +R+KV  G P      K + V +  ++       KY T+  LS  +G K+
Sbjct:    1 MTVIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPRRFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVGNP------KNLTVDE--KISHKLNTTKYITLAELSKHLGAKF 137          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_NANEQ (50S ribosomal protein L13P OS=Nanoarchaeum equitans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 56/163 (34.36%), Postives = 88/163 (53.99%), Query Frame = 3
Query:   75 FESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVV--------PQAL--RVLRLRP-----GRKYCTVGRLSHEVGWKY 518
            F   ++ D +G +LGRLAS VA+ L  G ++ +V  E   I+G+    K ++   L+K+ R +  +G PF+ + P  IL + IRGM+P KTARG   L+ +KV  G+P     K ++ +        P+AL   VL+ +P       KY  +G LS  +G K+
Sbjct:    3 FLGELIYDAEGLVLGRLASIVARNLKRGYRVKIVNAEKAIITGDPNMVKKEW---LQKVKRGDYYKG-PFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVPEELKDKPKLGLNLENAKGYPEALIKEVLKAKPKFERGNIKYIELGELSKYLGAKF 161          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METMP (50S ribosomal protein L13P OS=Methanococcus maripaludis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRV-VVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518
            +VV++ +  ++GRLAS VAK  L+G++I VV  E   ++G       KY     + +  NP + GP + R P  I+ + IRGM+P+K  RG  A +++K+  G+P        +   P  +         KY TVG LS  +G K+
Sbjct:    1 MVVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNPKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVPEGVSIDINLGSAPNTI---------KYVTVGELSQFLGAKF 137          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_SULAC (50S ribosomal protein L13P OS=Sulfolobus acidocaldarius GN=rpl13p PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 53/148 (35.81%), Postives = 72/148 (48.65%), Query Frame = 3
Query:   66 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVG 509
            MSS E +V++D    +LGR+++ +AK L +G+K+ VV  E   ISG   R    Y       T  NP R G    R P  I+ + +RGM+P K   G      LK   GIP   + K  +    A  V RL+   KY TV  LS  +G
Sbjct:    1 MSSQEEIVIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNPYRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIPKELEGKSMIRFDDA-DVSRLK--GKYITVAELSRLLG 144          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_NATPD (50S ribosomal protein L13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 3
Query:   69 SSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIP 398
            + F++ VVID +  +LGR+AS VA++ L+G++I VV  E   I+G        Y    RK       RG P + + P RI  +++RGM+P+KT RG  A E +++  G P
Sbjct:    4 AEFDADVVIDARDCILGRVASQVAERALDGERIAVVNAEQAVITGSEDDIMEVY----RKRDEVGSDRG-PRYPKRPDRIFKRSVRGMLPYKTTRGREAFENVRIYMGNP 108          
The following BLAST results are available for this feature:
BLAST of FC931783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL13_PYRAE7.887e-1737.7250S ribosomal protein L13P OS=Pyrobaculum aerophil... [more]
RL13_THENV1.030e-1635.1550S ribosomal protein L13P OS=Thermoproteus neutro... [more]
RL13_PYRIL2.295e-1635.0050S ribosomal protein L13P OS=Pyrobaculum islandic... [more]
RL13_METKA5.652e-1536.6750S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RL13_AERPE7.382e-1534.2750S ribosomal protein L13P OS=Aeropyrum pernix GN=... [more]
RL13_METJA1.645e-1436.5550S ribosomal protein L13P OS=Methanocaldococcus j... [more]
RL13_NANEQ3.664e-1434.3650S ribosomal protein L13P OS=Nanoarchaeum equitan... [more]
RL13_METMP1.179e-1232.8850S ribosomal protein L13P OS=Methanococcus maripa... [more]
RL13_SULAC1.539e-1235.8150S ribosomal protein L13P OS=Sulfolobus acidocald... [more]
RL13_NATPD2.903e-1137.2750S ribosomal protein L13P OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionC34201B07EF PostHarveN Citrus clementina cDNA clone C34201B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931783 ID=FC931783; Name=FC931783; organism=Citrus clementina; type=EST; length=701bp
GGGACTTGACACCCACGACAACAACCGCCGACAACATCCATCCCACGGGA
CATTAGATCACCAGGATGTCCTCCTTCGAATCAGTGGTCGTCATCGACGG
CAAAGGACACCTCCTCGGTCGTCTGGCCAGCACTGTCGCCAAGCAGCTGC
TCAACGGTCAGAAGATCGTCGTCGTGAGATGTGAGGCTCTCAACATCTCC
GGCGAGTTCTTCCGCGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGAT
GACTCGTTTCAACCCCACCCGTGGTGGTCCCTTCCACTTCCGCGCTCCTT
CCCGTATCCTCTACAAGGCCATCCGCGGCATGATGCCCCACAAGACCGCC
CGTGGTGCCGCCGCTCTGGAGCGCCTCAAGGTCCTCGAGGGTATTCCCCC
TCCCTGCGACAAGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTCCGTGTCC
TGCGTCTCCGCCCCGGTCGCAAGTACTGCACCGTCGGCCGTCTCAGCCAC
GAGGTTGGCTGGAAGTACCAGGATGTTGTTTCCAGACTCGAGGAGCGCAG
AAAGGTCAAGAGCAAGGCCTACTACGAGCGCAAGAAGGCCGCTCGCCGTG
TCCTTGCCAAGGCCGAGCAGGGAGCGAACGTGGACAGCAAGACCAAGACC
CAGCTTGCTCAGTTTGGCTACTAGATACCTTTAGCGTGGCTGGTTGTTGT
G
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