FC931783
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRAE (50S ribosomal protein L13P OS=Pyrobaculum aerophilum GN=rpl13p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17 Identity = 63/167 (37.72%), Postives = 95/167 (56.89%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVV---VPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVK 560 V++D +GH+ GRLA+ +AK LL +IVVV E L I+G+ K+ + RK+ T +NP + GP R P R+ + +RGM+P K+ G +AL+RL+V IP ++KR+V VP+A LRLRP +Y T+ E W+ D + + RR V+ Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEWRTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIPIEIMQRKRLVLYEVPEA--KLRLRPLLQYTTL-----EEVWRSIDPEAWEKWRRAVE 175
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_THENV (50S ribosomal protein L13P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl13p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16 Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRV-LRLRPGRKYCTVGRLSHEV---GWKYQDVVSRLEERR 551 VVI+ +GH+ GRLA+ +AK LL G +IVVV E L ++G+ K+ + RK+ T +NP + GP R P R+ + +RGM+P + G AL+RL+V +P +KR+VV + LR+RP KY T+ + +V W+ L ++R Sbjct: 17 VVINAEGHIAGRLATYIAKALLEKPGLRIVVVNAEKLVVTGD---EKMVVEWFKRKISEWGTHYNPEKAGPKIPRRPDRVFKRMVRGMLPKRAESGRRALKRLRVYVSVPMELLSRKRLVVYEVPPAKLRMRPLAKYVTLEEVWRQVDPAAWEQWKKAQELWQKR 178
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PYRIL (50S ribosomal protein L13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl13p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16 Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIP-PPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEE 545 ++ID GH+ GRLA+ VAK LL +IVVV E L I+G+ K+ + RK+ T +NP + GP R P R+ + +RGM+P K RG +AL+RL+V IP ++KK V+ L L+++P K+ T+ + + + + R +E Sbjct: 17 IIIDADGHIAGRLATYVAKALLERPSLRIVVVNAEKLVITGD---RKMVIEWFKRKISEWRTHYNPEKAGPKIPRRPDRVFKRIVRGMLPKKNMRGRSALKRLRVYMSIPLEMLNRKKLVLYEVPLAKLKVKPLAKFVTLEEVWRNIDFAAWEQWKRAQE 173
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15 Identity = 55/150 (36.67%), Postives = 83/150 (55.33%), Query Frame = 3 Query: 78 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCD----KKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 515 E VID + +LGRLAS VAK++L G++I V+ E I+G+ K +L+K+ R +P +G PF+ R P I + +RGM+P KT RG A +RL+ G P + + +RV R+ L Y T+G LS E+G++ Sbjct: 13 EEWTVIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGKKNTIK---EEWLQKIQRGDPKKG-PFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADMSRLGHL----WYVTLGELSEELGYQ 154
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_AERPE (50S ribosomal protein L13P OS=Aeropyrum pernix GN=rpl13p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15 Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 515 +V+DG G ++GRLAS VAK LL G ++ VV E + +SG+ Y + + + P R P R+ A+RGM+P ARG AL RL+V G+P ++ V P+A R Y +G ++ ++GWK Sbjct: 11 IVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTVLGVKSHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVPDELKGREFVRFPEA---DASRLSSHYIELGAVARQLGWK 150
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METJA (50S ribosomal protein L13P OS=Methanocaldococcus jannaschii GN=rpl13p PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14 Identity = 53/145 (36.55%), Postives = 76/145 (52.41%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518 + VID +G +LGRLAS VAK++L G++IV+V E + I+G Y K NP R GP R P IL + IR M+P+K +G A +R+KV G P K + V + ++ KY T+ LS +G K+ Sbjct: 1 MTVIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPRRFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVGNP------KNLTVDE--KISHKLNTTKYITLAELSKHLGAKF 137
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_NANEQ (50S ribosomal protein L13P OS=Nanoarchaeum equitans GN=rpl13p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14 Identity = 56/163 (34.36%), Postives = 88/163 (53.99%), Query Frame = 3 Query: 75 FESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVV--------PQAL--RVLRLRP-----GRKYCTVGRLSHEVGWKY 518 F ++ D +G +LGRLAS VA+ L G ++ +V E I+G+ K ++ L+K+ R + +G PF+ + P IL + IRGM+P KTARG L+ +KV G+P K ++ + P+AL VL+ +P KY +G LS +G K+ Sbjct: 3 FLGELIYDAEGLVLGRLASIVARNLKRGYRVKIVNAEKAIITGDPNMVKKEW---LQKVKRGDYYKG-PFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVPEELKDKPKLGLNLENAKGYPEALIKEVLKAKPKFERGNIKYIELGELSKYLGAKF 161
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METMP (50S ribosomal protein L13P OS=Methanococcus maripaludis GN=rpl13p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12 Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRV-VVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518 +VV++ + ++GRLAS VAK L+G++I VV E ++G KY + + NP + GP + R P I+ + IRGM+P+K RG A +++K+ G+P + P + KY TVG LS +G K+ Sbjct: 1 MVVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNPKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVPEGVSIDINLGSAPNTI---------KYVTVGELSQFLGAKF 137
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_SULAC (50S ribosomal protein L13P OS=Sulfolobus acidocaldarius GN=rpl13p PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12 Identity = 53/148 (35.81%), Postives = 72/148 (48.65%), Query Frame = 3 Query: 66 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVG 509 MSS E +V++D +LGR+++ +AK L +G+K+ VV E ISG R Y T NP R G R P I+ + +RGM+P K G LK GIP + K + A V RL+ KY TV LS +G Sbjct: 1 MSSQEEIVIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNPYRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIPKELEGKSMIRFDDA-DVSRLK--GKYITVAELSRLLG 144
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_NATPD (50S ribosomal protein L13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl13p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 3 Query: 69 SSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIP 398 + F++ VVID + +LGR+AS VA++ L+G++I VV E I+G Y RK RG P + + P RI +++RGM+P+KT RG A E +++ G P Sbjct: 4 AEFDADVVIDARDCILGRVASQVAERALDGERIAVVNAEQAVITGSEDDIMEVY----RKRDEVGSDRG-PRYPKRPDRIFKRSVRGMLPYKTTRGREAFENVRIYMGNP 108 The following BLAST results are available for this feature:
BLAST of FC931783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931783 ID=FC931783; Name=FC931783; organism=Citrus clementina; type=EST; length=701bpback to top |