FC931784

Overview
NameFC931784
Unique NameFC931784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.802e-22
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  408 RLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            + +ALGN I  ND  AL      R+  + I ++LGVEV R  IAG   VGS    +N+GGLVHP TS E+L+ LS L +V +  GT N G   +G  +  N
Sbjct:  102 KYTALGNLILTNDKAALVSAKFSRKEAQEIGEILGVEVERGVIAGLHAVGSAGVVTNKGGLVHPETSDEELEWLSDLFKVDVYVGTANMGVPYVGTCMLAN 202          

HSP 2 Score: 46.595 bits (109), Expect = 3.802e-22
Identity = 27/70 (38.57%), Postives = 37/70 (52.86%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 376
            RL FENS  +GVF   T+   L+  G  E         L   +PV++ S+  +RIIG L  GN N ++LP
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLIREGLQEKKLEVIRETLK--VPVIEVSVMKSRIIGTLATGNSNAIILP 72          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.436e-22
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  408 RLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            + +ALGN I  ND  AL      R+  + I D+LGVEV R  IAG   VGS    +N+GGLVHP  S E+L+ LS L +V +  GT N G   +G  +  N
Sbjct:  102 KYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPYVGTCMLAN 202          

HSP 2 Score: 46.595 bits (109), Expect = 6.436e-22
Identity = 29/70 (41.43%), Postives = 37/70 (52.86%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 376
            RL FENS  +GVF   T+   LV  G  E         L   +PV++ SI  +RIIG L  GN N +L+P
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLATGNSNAILVP 72          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_PYRFU (Translation initiation factor 6 OS=Pyrococcus furiosus GN=eif6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.121e-21
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  402 EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            + + +ALGN I  ND  AL  +   RE  + I D+LGVEV R  IAG + VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   +G+ +  N
Sbjct:  100 QTKYTALGNLILTNDKGALVSSKFSREEAKKIGDILGVEVERGVIAGIVAVGSAGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPYVGSCMLAN 202          

HSP 2 Score: 41.5874 bits (96), Expect = 3.121e-21
Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 376
            +L FENS  +GVF   T+   L+  G  E         L   +PVV+ S+  +RIIG L  GN N +++P
Sbjct:    5 KLDFENSPYLGVFGIATDKVVLIREGLQEKKLEVIREVLK--VPVVEASLMKSRIIGVLGAGNSNAIIVP 72          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METST (Translation initiation factor 6 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif6 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.122e-21
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  405 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++L+A+GN I  ND+ AL +  L  E + II + L VEV   +IAG  +VGS  + +NRG LVHP  S E+LD +  +L VP   GTVNRG +++GA +  N
Sbjct:   94 DKLTAIGNIIVANDNGALVNPSLSDEAKRIIKNTLEVEVVETSIAGLDIVGSLVAATNRGALVHPDASEEELDLVEDVLGVPAEIGTVNRGVKLVGACIIAN 195          

HSP 2 Score: 36.1946 bits (82), Expect = 3.122e-21
Identity = 20/72 (27.78%), Postives = 37/72 (51.39%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 373
            M  +   + +  +GV     +   +V+ G  +S+  + +  L   +P++KT I G+ + G L  GN NGLL+
Sbjct:    1 MIQKFDIDGNPNLGVSILAKDNVAIVSPGLQDSYLKSIKETLN--VPIIKTPICGSNLAGALMAGNSNGLLI 70          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_THEGJ (Translation initiation factor 6 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.280e-21
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  402 EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            + RL+A GN I  ND  AL   D  RE    I D+LGV V R  IA    VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   +G+ +  N
Sbjct:  100 QSRLTAFGNLILANDKGALVSKDFTREEARKIEDILGVPVERGVIADYTAVGSVGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPFVGSCMIAN 202          

HSP 2 Score: 43.5134 bits (101), Expect = 5.280e-21
Identity = 24/70 (34.29%), Postives = 39/70 (55.71%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 376
            RL FENS  +GV+   T+   ++  G  E   +T    L   +P+++TS+  +RI+G    GN N L++P
Sbjct:    5 RLDFENSPYLGVYGFATDRVAVIREGLGEKKLATLREVLK--VPLIETSVMKSRIVGIFVAGNSNALIVP 72          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_AERPE (Translation initiation factor 6 OS=Aeropyrum pernix GN=eif6 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.966e-20
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  R +ALGN I CND   LA   L++E  + ++D LGVEV   ++AG   VGS    +NRGGL HP  S E+L  LS + +VP  AGT+N G E +  GL  N
Sbjct:  103 VPTRSNALGNVIVCNDRACLASPGLEKEALKTVSDTLGVEVVEGSVAGVYTVGSAIVVTNRGGLAHPDASEEELKFLSDVFKVPFEAGTINFGVEFVRTGLVAN 206          

HSP 2 Score: 28.8758 bits (63), Expect = 1.966e-20
Identity = 18/71 (25.35%), Postives = 35/71 (49.30%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIG-GSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 376
            +L    +  +GV+   ++++ L     G++   +  E     +  VV+  + G R++G L  GN  G+LLP
Sbjct:   11 KLSLYGNPNIGVYLTASDSYVLAPDDIGADDVRTISEVLGVAMERVVRLRVLGMRLVGVLTTGNSRGILLP 81          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_PYRKO (Translation initiation factor 6 OS=Pyrococcus kodakaraensis GN=eif6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.323e-20
Identity = 44/104 (42.31%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  402 EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV-EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            + RL+ALGN I  ND  AL   +  RE    I ++LGV EV R  IA    VGS    +N+GGLVHP  + E+L+ LS L  V +  GT N G   +G+ +  N
Sbjct:  100 KSRLTALGNLILTNDKAALVSKEFTREEANAIGEILGVDEVERGMIASYRSVGSVGVVTNKGGLVHPEATDEELEWLSDLFGVDIYVGTANMGVPFVGSCMLAN 203          

HSP 2 Score: 43.8986 bits (102), Expect = 7.323e-20
Identity = 24/70 (34.29%), Postives = 38/70 (54.29%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 376
            RL FENS  +GV+ + T+   L+  G  E         L   +P+++TSI  +RI+G    GN N +++P
Sbjct:    5 RLDFENSPYLGVYGRATDRVLLLREGLGEKKLEVLREVLK--VPIIETSIMKSRIVGIFAAGNSNAIIVP 72          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.616e-19
Identity = 37/100 (37.00%), Postives = 51/100 (51.00%), Query Frame = 3
Query:  411 LSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++A GN +  N+  A  H DL R+    I + L V V R  IA    VG+    ++ G L HP T+ E LD L  L  V    GT+N G  ++G+GL  N
Sbjct:   96 INAAGNVVLANNEGAFVHPDLSRDALSAIEEALSVPVERGRIADVQTVGTAAVVTDDGVLSHPKTTDEKLDFLEELFGVYADIGTINYGGPLVGSGLVAN 195          

HSP 2 Score: 52.373 bits (124), Expect = 4.616e-19
Identity = 31/76 (40.79%), Postives = 41/76 (53.95%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            R     S  VGVF+  T+ + LV     ES  S FE EL   +  V T+I G+  +G L VGN+NGLL+    TD+
Sbjct:    3 RAALSGSSYVGVFATATDEYLLVRPDIEESLQSEFETELD--VTAVPTTIAGSGTVGSLAVGNENGLLVTERVTDR 76          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_THEON (Translation initiation factor 6 OS=Thermococcus onnurineus (strain NA1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.995e-19
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 3
Query:  402 EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  L+A GN I  ND  AL      RE  + + D+LGVEV R  I     VGS    +NRGGLVHP  + E+L+ L  L +V +  GT N G   +G+ +  N
Sbjct:  100 QSTLTAFGNLILANDKAALISVKFTREEAKKLEDILGVEVERGMIGDYHAVGSVGVVTNRGGLVHPEATDEELEWLRDLFKVDIYVGTANMGVPFVGSCMLAN 202          

HSP 2 Score: 41.5874 bits (96), Expect = 5.995e-19
Identity = 23/70 (32.86%), Postives = 37/70 (52.86%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 376
            +L FENS  +GV+   T+   L+  G  E         L   +P+++TSI  +RI+G    GN N +++P
Sbjct:    5 KLDFENSPYLGVYGTATDRVALIREGLGEKKLEVLREVLK--VPLIETSIMKSRIVGVFAAGNSNAIVVP 72          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METBF (Translation initiation factor 6 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=eif6 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.003e-19
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  408 RLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +L+A+GN +  ND  AL H +L  +  E+IA  L VEV+R TIAG   VG     +N+G LVHP  +  +++ L  L ++P+  GT N G++++G+GL  N
Sbjct:   93 KLNAVGNIVLANDSAALVHPELSDKAIEVIASTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEIETLEKLFELPVNIGTTNFGTQMLGSGLLAN 193          

HSP 2 Score: 33.113 bits (74), Expect = 6.003e-19
Identity = 21/64 (32.81%), Postives = 30/64 (46.88%), Query Frame = 2
Query:  194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTT 385
            +GVF+  T    LV  G      +  E  L     +V+T + G+ +IG L  GN NG L  + T
Sbjct:   13 IGVFATCTEDVVLVPTGTKPETCAILEDSLD--ARIVETLVNGSVVIGALSRGNSNGFLYSYGT 74          
The following BLAST results are available for this feature:
BLAST of FC931784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IF6_PYRHO3.802e-2243.56Translation initiation factor 6 OS=Pyrococcus hori... [more]
IF6_PYRAB6.436e-2243.56Translation initiation factor 6 OS=Pyrococcus abys... [more]
IF6_PYRFU3.121e-2142.72Translation initiation factor 6 OS=Pyrococcus furi... [more]
IF6_METST3.122e-2145.10Translation initiation factor 6 OS=Methanosphaera ... [more]
IF6_THEGJ5.280e-2142.72Translation initiation factor 6 OS=Thermococcus ga... [more]
IF6_AERPE1.966e-2045.19Translation initiation factor 6 OS=Aeropyrum perni... [more]
IF6_PYRKO7.323e-2042.31Translation initiation factor 6 OS=Pyrococcus koda... [more]
IF6_NATPD4.616e-1937.00Translation initiation factor 6 OS=Natronomonas ph... [more]
IF6_THEON5.995e-1939.81Translation initiation factor 6 OS=Thermococcus on... [more]
IF6_METBF6.003e-1940.59Translation initiation factor 6 OS=Methanosarcina ... [more]

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Properties
Property NameValue
Genbank descriptionC34201B08EF PostHarveN Citrus clementina cDNA clone C34201B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931784 ID=FC931784; Name=FC931784; organism=Citrus clementina; type=EST; length=712bp
GATCGCAGGTAGTTAGTTACATTTGATTTTATTGATATGGATATTCTGTA
CATGTTCGGTGGCTAACAGAAAAATCGAATTTGTATGTTATTCTTGCAGG
TCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTTAATT
TGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTTGGTG
TGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGGTTCT
GAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTTATTCCTGT
TGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGTGTTG
GTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGCGTAT
TGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCATG
TTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGCA
GATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAATATCCT
TGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCACCCTC
ATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAGTACCT
TTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCTGGGTT
AACTGTGAATGA
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