FC931784
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.717e-18 Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 3 Query: 405 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 E ++A GN I ND A H DL E E I LGVEV T+ G G +N+G +VHP + +++ L T+ +P+ GT+N GS ++G GL VN Sbjct: 93 ETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGLLVN 194 HSP 2 Score: 36.5798 bits (83), Expect = 1.717e-18 Identity = 20/73 (27.40%), Postives = 35/73 (47.95%), Query Frame = 2 Query: 176 FENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 F +GVF+++ ++ E F + L + ++ T+I G+ IIG L GN GL++ TD+ Sbjct: 7 FAGDPNIGVFARVAGNIAVIPPEAPEEFRNAIREGLG--VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDE 77
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.775e-18 Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 3 Query: 399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 +E ++A GN I ND +A H D+D T E I VLGV V R T++G VG +NRG LVH ++ +L L + +P+ GT+N GS ++G GL N Sbjct: 91 LEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVGMAGYATNRGILVHARSAGRELATLESTTDLPVGTGTINMGSGLVGTGLLAN 194 HSP 2 Score: 35.4242 bits (80), Expect = 3.775e-18 Identity = 19/72 (26.39%), Postives = 35/72 (48.61%), Query Frame = 2 Query: 158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 373 M L +E +G+F+++ +V S + + + L + +VKT + G+ IIG L GN G ++ Sbjct: 1 MIRTLAYEGDPHIGIFTRVLEDIAVVPPEASADYCAALKEALG--VTLVKTHVQGSSIIGSLVSGNSRGAIV 70
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_THEAC (Translation initiation factor 6 OS=Thermoplasma acidophilum GN=eif6 PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 1.146e-16 Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 3 Query: 396 RIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 +++++++A+GN I NDH A+ H + + + I D LGVE R TI + VGS +++G LV+P T ++L+ L +V + +GT N GS +GA + N Sbjct: 89 QLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVAN 193 HSP 2 Score: 32.3426 bits (72), Expect = 1.146e-16 Identity = 16/62 (25.81%), Postives = 33/62 (53.23%), Query Frame = 2 Query: 194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 379 +G+++K + + + E + F+ L + V + SI + +IG + V N NGL++P+ Sbjct: 13 IGIYAKAWDDVAFITMMADEKTVADFQEVLQ--VDVRRISIDNSSLIGTMMVMNSNGLIVPY 72
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.271e-16 Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 3 Query: 399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 +EE ++A GN I NDH A H ++D E + ++D L V V T+ VG +N G +V P T+ ++ L + +P+ GTV G+ ++G GL N Sbjct: 91 LEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVAN 194 HSP 2 Score: 37.7354 bits (86), Expect = 3.271e-16 Identity = 21/67 (31.34%), Postives = 38/67 (56.72%), Query Frame = 2 Query: 194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 +GVF+++ + +V E + +E L + +V+T+I + IIG L VGN NGL++ T++ Sbjct: 13 IGVFTRVFDDIAVVPPDVPEEVTTRYEEALK--VEIVRTTIQRSPIIGSLLVGNNNGLVITGMATEE 77
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 7.187e-16 Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 3 Query: 399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 ++++++A+GN I NDH A+ H + + I D LGVE R +I + VGS +++G LV+P T ++L+ L +V + +GT N GS +GA + N Sbjct: 92 LKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVAN 195 HSP 2 Score: 31.9574 bits (71), Expect = 7.187e-16 Identity = 20/76 (26.32%), Postives = 37/76 (48.68%), Query Frame = 2 Query: 152 VIMATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 379 VI T +M S +G+++K + + E + F L + + + SI G+ +IG + N NG++LP+ Sbjct: 3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPY 74
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16 Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 3 Query: 399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 + +++A+GN + NDH AL H DLD E+I VLG V R + G VGS +++G +VHP + E+++ +S +L V + GTVNRGS +G G+ VN Sbjct: 93 LPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGIVVN 196
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 9.336e-16 Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 3 Query: 399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 ++ +L+ALGN I ND A+ L +E + I+DVLGVE ++ IAG G +N G +HP ED+ S LL V + ++N G + +G+ N Sbjct: 94 LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAGFNQTGVVMVANNSGAAIHPEADEEDMKTFSNLLGVKIEQSSINNGIPYVSSGILAN 197 HSP 2 Score: 36.1946 bits (82), Expect = 9.336e-16 Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 2 Query: 194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHT 382 +GV+ + + L+ +G F T +LA + V + TSI R+IG LC+ N G+LLP T Sbjct: 14 IGVYISVNDNTILLPMG----FAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKT 74
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.213e-15 Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3 Query: 399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 + +++ALGN I N+ AL + + + E+II + LGVE + R IA I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL N Sbjct: 95 LNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVAN 199 HSP 2 Score: 30.4166 bits (67), Expect = 1.213e-15 Identity = 20/80 (25.00%), Postives = 38/80 (47.50%), Query Frame = 2 Query: 167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQAY 400 RL + +GV+ N + ++ G S + +A V+ +++ I + ++G GN NG+LLP +T D + Sbjct: 5 RLSVFGTDNIGVYIYTNNKYTIIPRG----LDSETKENIAQVLGTELLEAEISRSFLLGIFISGNDNGILLPKSTIDDEF 80
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.213e-15 Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 3 Query: 411 LSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 ++A GN I ND VA H ++ + E I L V V R T+ G VG +N+G LVHP + ++ L ++ +P+ G+VN GS ++G GL N Sbjct: 95 MNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLAN 194 HSP 2 Score: 37.3502 bits (85), Expect = 1.213e-15 Identity = 21/67 (31.34%), Postives = 34/67 (50.75%), Query Frame = 2 Query: 194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 +GV++++ +V G F + EL + +V T I G+ IIG L GN GL++ TD+ Sbjct: 13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDE 77
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULIY (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif6 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.576e-15 Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3 Query: 399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 + +++ALGN I N+ AL + + + E+II + LGVE R+ IA I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL N Sbjct: 95 LNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVAN 199 HSP 2 Score: 29.6462 bits (65), Expect = 1.576e-15 Identity = 19/80 (23.75%), Postives = 37/80 (46.25%), Query Frame = 2 Query: 167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQAY 400 RL + +GV+ N + +V G S + + ++ +++ I + ++G GN NG+LLP +T D + Sbjct: 5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEF 80 The following BLAST results are available for this feature:
BLAST of FC931784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931784 ID=FC931784; Name=FC931784; organism=Citrus clementina; type=EST; length=712bpback to top |