FC931784

Overview
NameFC931784
Unique NameFC931784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.717e-18
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  405 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G    G     +N+G +VHP  + +++  L T+  +P+  GT+N GS ++G GL VN
Sbjct:   93 ETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGLLVN 194          

HSP 2 Score: 36.5798 bits (83), Expect = 1.717e-18
Identity = 20/73 (27.40%), Postives = 35/73 (47.95%), Query Frame = 2
Query:  176 FENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            F     +GVF+++     ++     E F +     L   + ++ T+I G+ IIG L  GN  GL++    TD+
Sbjct:    7 FAGDPNIGVFARVAGNIAVIPPEAPEEFRNAIREGLG--VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDE 77          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.775e-18
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +E  ++A GN I  ND +A  H D+D  T E I  VLGV V R T++G   VG     +NRG LVH  ++  +L  L +   +P+  GT+N GS ++G GL  N
Sbjct:   91 LEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVGMAGYATNRGILVHARSAGRELATLESTTDLPVGTGTINMGSGLVGTGLLAN 194          

HSP 2 Score: 35.4242 bits (80), Expect = 3.775e-18
Identity = 19/72 (26.39%), Postives = 35/72 (48.61%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 373
            M   L +E    +G+F+++     +V    S  + +  +  L   + +VKT + G+ IIG L  GN  G ++
Sbjct:    1 MIRTLAYEGDPHIGIFTRVLEDIAVVPPEASADYCAALKEALG--VTLVKTHVQGSSIIGSLVSGNSRGAIV 70          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_THEAC (Translation initiation factor 6 OS=Thermoplasma acidophilum GN=eif6 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.146e-16
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  396 RIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +++++++A+GN I  NDH A+ H +    + + I D LGVE  R TI   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA +  N
Sbjct:   89 QLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVAN 193          

HSP 2 Score: 32.3426 bits (72), Expect = 1.146e-16
Identity = 16/62 (25.81%), Postives = 33/62 (53.23%), Query Frame = 2
Query:  194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 379
            +G+++K  +    + +   E   + F+  L   + V + SI  + +IG + V N NGL++P+
Sbjct:   13 IGIYAKAWDDVAFITMMADEKTVADFQEVLQ--VDVRRISIDNSSLIGTMMVMNSNGLIVPY 72          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.271e-16
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +EE ++A GN I  NDH A  H ++D E  + ++D L V V   T+     VG     +N G +V P T+  ++  L  +  +P+  GTV  G+ ++G GL  N
Sbjct:   91 LEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVAN 194          

HSP 2 Score: 37.7354 bits (86), Expect = 3.271e-16
Identity = 21/67 (31.34%), Postives = 38/67 (56.72%), Query Frame = 2
Query:  194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            +GVF+++ +   +V     E   + +E  L   + +V+T+I  + IIG L VGN NGL++    T++
Sbjct:   13 IGVFTRVFDDIAVVPPDVPEEVTTRYEEALK--VEIVRTTIQRSPIIGSLLVGNNNGLVITGMATEE 77          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.187e-16
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++++++A+GN I  NDH A+ H     +  + I D LGVE  R +I   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA +  N
Sbjct:   92 LKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVAN 195          

HSP 2 Score: 31.9574 bits (71), Expect = 7.187e-16
Identity = 20/76 (26.32%), Postives = 37/76 (48.68%), Query Frame = 2
Query:  152 VIMATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 379
            VI  T +M   S  +G+++K  +    +     E   + F   L   + + + SI G+ +IG +   N NG++LP+
Sbjct:    3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPY 74          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  +++A+GN +  NDH AL H DLD    E+I  VLG  V R  + G   VGS    +++G +VHP  + E+++ +S +L V +  GTVNRGS  +G G+ VN
Sbjct:   93 LPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGIVVN 196          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.336e-16
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++ +L+ALGN I  ND  A+    L +E  + I+DVLGVE  ++ IAG    G     +N G  +HP    ED+   S LL V +   ++N G   + +G+  N
Sbjct:   94 LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAGFNQTGVVMVANNSGAAIHPEADEEDMKTFSNLLGVKIEQSSINNGIPYVSSGILAN 197          

HSP 2 Score: 36.1946 bits (82), Expect = 9.336e-16
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 2
Query:  194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHT 382
            +GV+  + +   L+ +G    F  T   +LA  + V  + TSI   R+IG LC+ N  G+LLP T
Sbjct:   14 IGVYISVNDNTILLPMG----FAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKT 74          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-15
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  +++ALGN I  N+  AL + + +   E+II + LGVE + R  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  N
Sbjct:   95 LNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVAN 199          

HSP 2 Score: 30.4166 bits (67), Expect = 1.213e-15
Identity = 20/80 (25.00%), Postives = 38/80 (47.50%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQAY 400
            RL    +  +GV+    N + ++  G      S  +  +A V+   +++  I  + ++G    GN NG+LLP +T D  +
Sbjct:    5 RLSVFGTDNIGVYIYTNNKYTIIPRG----LDSETKENIAQVLGTELLEAEISRSFLLGIFISGNDNGILLPKSTIDDEF 80          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.213e-15
Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:  411 LSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++G GL  N
Sbjct:   95 MNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLAN 194          

HSP 2 Score: 37.3502 bits (85), Expect = 1.213e-15
Identity = 21/67 (31.34%), Postives = 34/67 (50.75%), Query Frame = 2
Query:  194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            +GV++++     +V  G    F +    EL   + +V T I G+ IIG L  GN  GL++    TD+
Sbjct:   13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDE 77          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULIY (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.576e-15
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  N
Sbjct:   95 LNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVAN 199          

HSP 2 Score: 29.6462 bits (65), Expect = 1.576e-15
Identity = 19/80 (23.75%), Postives = 37/80 (46.25%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQAY 400
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D  +
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEF 80          
The following BLAST results are available for this feature:
BLAST of FC931784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IF6_METB61.717e-1839.22Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_METPE3.775e-1840.38Translation initiation factor 6 OS=Methanosphaerul... [more]
IF6_THEAC1.146e-1635.24Translation initiation factor 6 OS=Thermoplasma ac... [more]
IF6_METHJ3.271e-1633.65Translation initiation factor 6 OS=Methanospirillu... [more]
IF6_THEVO7.187e-1634.62Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_METKA8.938e-1640.38Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_NITMS9.336e-1634.62Translation initiation factor 6 OS=Nitrosopumilus ... [more]
IF6_SULSO1.213e-1542.86Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_METMJ1.213e-1536.00Translation initiation factor 6 OS=Methanoculleus ... [more]
IF6_SULIY1.576e-1542.86Translation initiation factor 6 OS=Sulfolobus isla... [more]

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Properties
Property NameValue
Genbank descriptionC34201B08EF PostHarveN Citrus clementina cDNA clone C34201B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931784 ID=FC931784; Name=FC931784; organism=Citrus clementina; type=EST; length=712bp
GATCGCAGGTAGTTAGTTACATTTGATTTTATTGATATGGATATTCTGTA
CATGTTCGGTGGCTAACAGAAAAATCGAATTTGTATGTTATTCTTGCAGG
TCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTTAATT
TGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTTGGTG
TGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGGTTCT
GAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTTATTCCTGT
TGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGTGTTG
GTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGCGTAT
TGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCATG
TTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGCA
GATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAATATCCT
TGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCACCCTC
ATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAGTACCT
TTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCTGGGTT
AACTGTGAATGA
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