FC931784

Overview
NameFC931784
Unique NameFC931784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULIN (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.576e-15
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  N
Sbjct:   95 LNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVAN 199          

HSP 2 Score: 29.6462 bits (65), Expect = 1.576e-15
Identity = 19/80 (23.75%), Postives = 37/80 (46.25%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQAY 400
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D  +
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEF 80          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULIL (Translation initiation factor 6 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.576e-15
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  N
Sbjct:   95 LNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVAN 199          

HSP 2 Score: 29.6462 bits (65), Expect = 1.576e-15
Identity = 19/80 (23.75%), Postives = 37/80 (46.25%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQAY 400
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D  +
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEF 80          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULIM (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.663e-15
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  N
Sbjct:   95 LNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVAN 199          

HSP 2 Score: 29.6462 bits (65), Expect = 2.663e-15
Identity = 19/80 (23.75%), Postives = 37/80 (46.25%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQAY 400
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D  +
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEF 80          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.663e-15
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  N
Sbjct:   95 LNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVAN 199          

HSP 2 Score: 29.6462 bits (65), Expect = 2.663e-15
Identity = 19/80 (23.75%), Postives = 37/80 (46.25%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQAY 400
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D  +
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEF 80          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.663e-15
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  N
Sbjct:   95 LNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVAN 199          

HSP 2 Score: 29.6462 bits (65), Expect = 2.663e-15
Identity = 19/80 (23.75%), Postives = 37/80 (46.25%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQAY 400
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D  +
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEF 80          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  318 VATGLSGGFVLVTKMGFSC--HTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++ G S GF++      S     +   + + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R TIAG   VG     +NRG LVHP  + ++L  L  +  +P+  GT N GS+ +G+GL  N
Sbjct:   60 LSKGNSNGFLISRDANVSDLKDVEVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVGMAGVVTNRGLLVHPMVTPDELSVLEDVFALPIELGTTNYGSQAVGSGLLAN 192          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METMA (Translation initiation factor 6 OS=Methanosarcina mazei GN=eif6 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 49/138 (35.51%), Postives = 75/138 (54.35%), Query Frame = 3
Query:  318 VATGLSGGFVLVTKMGFSCHTQPQTKR-------IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++ G S GF+L     +    +   KR       + +RL+A+GN +  ND  AL H +L     EIIA  L VEV+R TIAG   VG     +N+G LVHP  ++ + + L  +  +P+  GT N G++++G+GL  N
Sbjct:   60 LSRGNSNGFLLP----YGSSVEEMQKRTGVPAGILPDRLNAVGNIVLANDSAALVHPELSDRALEIIARTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTVSEREALEEIFGLPVNIGTTNFGTQMLGSGLLAN 193          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.502e-15
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            I  +L+A GN I  NDH AL H        + I DVLGVE  + +IAG   VGS    ++RG LV      +++  LS L ++ +  GT N GS  +GA +  N
Sbjct:   91 INNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIAN 194          

HSP 2 Score: 30.4166 bits (67), Expect = 4.502e-15
Identity = 20/72 (27.78%), Postives = 35/72 (48.61%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 373
            M  ++   NS  +GV+++  N    + +  S+     FE  L     V K SIG + +IG +   N NG+++
Sbjct:    1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIVV 70          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 3
Query:  522 FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            FR +IA N LVGSY   +N+G +VHP T  +D+DE+++LLQVP+VAGT+NRG+  IG+GL VN
Sbjct:    4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVN 66          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 9.875e-15
Identity = 30/97 (30.93%), Postives = 48/97 (49.48%), Query Frame = 3
Query:  411 LSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 701
            ++A GN +  ND  A  H+ L  +    + + L V   R  +AG   VG+    +  G L HP  +  +L+ +   L V    GTVN G+ ++G+GL
Sbjct:   95 VNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTDGVLCHPKATDAELERIEETLGVYADVGTVNYGAPLVGSGL 191          

HSP 2 Score: 46.9802 bits (110), Expect = 9.875e-15
Identity = 24/69 (34.78%), Postives = 38/69 (55.07%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 373
            R  F  S  +GVF++ T +  LV     + F  +   EL   +P V+T++GG+  +G L  GN +GLL+
Sbjct:    3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLV 69          
The following BLAST results are available for this feature:
BLAST of FC931784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IF6_SULIN1.576e-1542.86Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIL1.576e-1542.86Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIM2.663e-1542.86Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIK2.663e-1542.86Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIA2.663e-1542.86Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_METBU3.397e-1536.09Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_METMA4.436e-1535.51Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_PICTO4.502e-1538.46Translation initiation factor 6 OS=Picrophilus tor... [more]
IF6_TRYCR5.794e-1558.73Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_HALS39.875e-1530.93Translation initiation factor 6 OS=Halobacterium s... [more]

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Properties
Property NameValue
Genbank descriptionC34201B08EF PostHarveN Citrus clementina cDNA clone C34201B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931784 ID=FC931784; Name=FC931784; organism=Citrus clementina; type=EST; length=712bp
GATCGCAGGTAGTTAGTTACATTTGATTTTATTGATATGGATATTCTGTA
CATGTTCGGTGGCTAACAGAAAAATCGAATTTGTATGTTATTCTTGCAGG
TCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTTAATT
TGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTTGGTG
TGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGGTTCT
GAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTTATTCCTGT
TGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGTGTTG
GTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGCGTAT
TGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCATG
TTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGCA
GATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAATATCCT
TGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCACCCTC
ATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAGTACCT
TTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCTGGGTT
AACTGTGAATGA
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