FC931789

Overview
NameFC931789
Unique NameFC931789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12223 contig Ccv1_Contig12223:20..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y1251_PYRAB (UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN=PYRAB12510 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.547e-27
Identity = 57/121 (47.11%), Postives = 81/121 (66.94%), Query Frame = 2
Query:  239 KEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 601
            KE + T KAP  +GPYSQAIK  N  FV+G + + PETG+ V   I++QT++V++NI  IL+ +GA  + VVK T+ L DL DF  +NE+Y++YF    PAR   +V+ LP D  +E+E I
Sbjct:    3 KEVIFTEKAPKPIGPYSQAIKVGNFIFVAGQIPIDPETGEIVKGDIKEQTKRVIENIKAILEEAGASLNDVVKVTVYLKDLNDFAKMNEVYSEYFGESKPARVAVEVSRLPKDVLIEMEAI 123          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: YABJ_BACSU (UPF0076 protein yabJ OS=Bacillus subtilis GN=yabJ PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 601
            + +AV T  APAA+GPYSQ I  NN+F+ SG + L P +G+ V+  I++QT QV  N+  +L+ +GA + +VVK T+ +AD++ F  VNE+Y +YF +  PAR+  +VA LP DA VEIE I
Sbjct:    1 MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP-SGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVI 121          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: DFRA_MYXXA (Protein dfrA OS=Myxococcus xanthus GN=dfrA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 57/123 (46.34%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  239 KEAVVTNKAPAALGPYSQAIK--ANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 601
            ++A+ +++AP A+GPYSQA++  A  + F+SG + L P T + V   +  Q E+V++N+  +L ASG D+S VV+ TI L DL DF  VNE+Y +YF    PARAT QV+ALP  ++VEI+ I
Sbjct:    6 RKAIHSDQAPKAIGPYSQAVQVDAGKMTFLSGQIPLDPATMEMVQGDVVAQAERVMENLKAVLAASGLDFSHVVRCTIFLTDLGDFARVNEVYGRYFTGAPPARATVQVSALPRGSKVEIDAI 128          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y709_SYNY3 (UPF0076 protein slr0709 OS=Synechocystis sp. (strain PCC 6803) GN=slr0709 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 56/124 (45.16%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSD-TIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF-PSPAPARATYQVAALPLDARVEIECIVALP 613
            + T +APA +GPY+QAI AN   F +G + L P+T   + +  +E Q +QVL N+G +L+ +G  + +VVKTT+ L D+ DF  VN IY +YF  + APAR+  +VA LP D  VEI+C+  LP
Sbjct:    6 IQTAQAPAPVGPYNQAIAANGFLFTAGQIALDPQTMTIMGEGNVEVQAKQVLTNLGAVLQEAGCGWENVVKTTVFLKDMNDFAAVNAIYGQYFDEATAPARSCVEVARLPKDVLVEIDCVAVLP 129          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y3206_SULSO (UPF0076 protein SSO3206 OS=Sulfolobus solfataricus GN=SSO3206 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 52/122 (42.62%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 601
            +KE + T KAP  +GPYSQ +K  ++ +VSG + + P+T + V   IE+QT +V++NI  +L+A+G     VV + + L D+KDF+  NE+Y+KYF +  PAR T +V+ LP D  +EI  I
Sbjct:    1 MKEIIFTEKAPKPIGPYSQGVKVGDILYVSGQIPVDPKTNEVVGKNIEEQTIRVIENIKAVLEAAGYMLDDVVMSFVYLKDIKDFQRFNEVYSKYFSNKPPARVTVEVSRLPRDVLIEITVI 122          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y364_AQUAE (UPF0076 protein aq_364 OS=Aquifex aeolicus GN=aq_364 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.390e-23
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP--SPAPARATYQVAALPLDARVEIECI 601
            + T KAP  +GPYSQA++ N   F+SG +G+ PETGK V +  ++Q  Q+ KN+  IL+ +G    ++VK TI + D+K FK +NEIY  YF   S  PAR T  V  LPL+A VEIE +
Sbjct:    4 IKTPKAPVPVGPYSQAVEVNGFLFISGQIGINPETGKLV-EGFKEQVIQIFKNVDAILEEAGLKRENIVKVTIYITDIKKFKELNEIYEDYFKDVSVKPARVTVGVKELPLNAEVEIEIV 122          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: ALDR_LACLA (Putative regulator aldR OS=Lactococcus lactis subsp. lactis GN=aldR PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 601
            + T  APAA+GPY Q    N L + SG + L P  G+ V D+IE QTEQV+KNI  ILK + +D+  V+KTT  L +++DF   N IY+K+F    PAR+   VA LP +  +EIE I
Sbjct:    4 IATLDAPAAIGPYVQGKIVNGLLYASGQIPLNPLNGEIVGDSIETQTEQVMKNISAILKEAHSDFDLVIKTTCFLKNIEDFSRFNAIYSKFFDKEFPARSAVGVAGLPKNVLIEIEVI 121          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y811_SULTO (UPF0076 protein ST0811 OS=Sulfolobus tokodaii GN=ST0811 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 56/120 (46.67%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  242 EAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 601
            E V T KAP  +GPYSQAIK  N  +VSG + + P T + V   I+ QT QVL NI EI+KA+G   S V    + L D+  F   N +YA+YF    PAR T +V+ LP DA +EI  I
Sbjct:    2 ETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVI 121          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: HMF1_YEAST (Protein HMF1 OS=Saccharomyces cerevisiae GN=HMF1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 55/120 (45.83%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIVA 607
            V+   APAA   YS A+K NNL F+SG + + P+  K V  +I D+ EQV++NI  +L+AS +    VVK  I LAD+  F   N +YAKYF +  PAR+   VAALPL   +E+E I A
Sbjct:    8 VICESAPAAAASYSHAMKVNNLIFLSGQIPVTPDN-KLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIAA 126          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y142_LEUMC (UPF0076 protein in leuC 5'region OS=Leuconostoc mesenteroides subsp. cremoris PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  239 KEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA----PARATYQVAALPLDARVEIE 595
            K+ V T  AP ALGPYSQAI  +N  ++SG +G+ PET +F   T  +Q  Q+  NI  IL  +    + +VK  +   D+ DF  VN+IYA+YF + +    PAR+  QVAALP +A++EIE
Sbjct:    3 KKVVSTTTAPKALGPYSQAILNDNTLYISGQIGIDPETDEFAGATTAEQAHQIFDNIDNILHEAEFSRNDIVKAALFFDDIADFALVNDIYAQYFDTTSVEEFPARSAVQVAALPKNAKLEIE 125          
The following BLAST results are available for this feature:
BLAST of FC931789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
Y1251_PYRAB8.547e-2747.11UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... [more]
YABJ_BACSU9.450e-2647.54UPF0076 protein yabJ OS=Bacillus subtilis GN=yabJ ... [more]
DFRA_MYXXA3.040e-2446.34Protein dfrA OS=Myxococcus xanthus GN=dfrA PE=3 SV... [more]
Y709_SYNY33.970e-2445.16UPF0076 protein slr0709 OS=Synechocystis sp. (stra... [more]
Y3206_SULSO8.845e-2442.62UPF0076 protein SSO3206 OS=Sulfolobus solfataricus... [more]
Y364_AQUAE4.390e-2346.67UPF0076 protein aq_364 OS=Aquifex aeolicus GN=aq_3... [more]
ALDR_LACLA5.733e-2346.61Putative regulator aldR OS=Lactococcus lactis subs... [more]
Y811_SULTO7.488e-2346.67UPF0076 protein ST0811 OS=Sulfolobus tokodaii GN=S... [more]
HMF1_YEAST6.339e-2245.83Protein HMF1 OS=Saccharomyces cerevisiae GN=HMF1 P... [more]
Y142_LEUMC8.279e-2243.90UPF0076 protein in leuC 5'region OS=Leuconostoc me... [more]

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Properties
Property NameValue
Genbank descriptionC34201C01EF PostHarveN Citrus clementina cDNA clone C34201C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931789 ID=FC931789; Name=FC931789; organism=Citrus clementina; type=EST; length=706bp
GACTTCGCTCGAGGGAAACTGAGAGAGCAACAGCGACAAAGACGAAGACA
TGGCGTGGTGTTCATTACGGTCGTTGAATGTCCCAACCATCGACATGGGC
GCACTGCGCACCCGCTCTCGCTTAGCCGCCGTCGGAATCGGCTGCGCCTC
GGTCGCCGGGTCCAGCGTCTGGCGCTCTTCTTGCAAGAAACACTCCACTC
CCTTTGCTTGCTTATCCACTTCCGCCGTTTCTAATTTGAAGGAGGCTGTT
GTGACTAACAAGGCTCCAGCAGCATTGGGACCTTATTCTCAGGCCATCAA
AGCAAATAACCTCTTTTTTGTCTCTGGGGTTCTTGGCTTAGTTCCAGAGA
CTGGGAAATTTGTCTCAGATACTATAGAGGACCAGACAGAGCAGGTTCTT
AAAAATATTGGGGAAATACTGAAAGCTAGCGGCGCTGACTATTCCTCTGT
GGTTAAGACAACAATTTTGTTGGCAGACTTGAAAGACTTCAAGACAGTGA
ATGAGATCTATGCTAAATACTTTCCTTCACCAGCTCCAGCACGTGCAACA
TATCAAGTAGCAGCACTGCCGTTGGATGCCAGGGTTGAGATTGAATGCAT
TGTAGCCCTTCCCAATTCTTGATTGGGGTGAAATTCTTCCAGGATAATCG
AATAGAGGGGAAGAAAGCACACCTTTGAGGACAGGATTTTGGAGGCATTT
TCTCAT
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