FC931789

Overview
NameFC931789
Unique NameFC931789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12223 contig Ccv1_Contig12223:20..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y1466_PASMU (UPF0076 protein PM1466 OS=Pasteurella multocida GN=PM1466 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS----PAPARATYQVAALPLDARVEIECI 601
            + + + T+ APAA+GPY QA+   N+   SG + + P+TG+  +D +  Q  Q L+N+  I++ +G   +++VKTT+ + DL DF  VN  Y ++F        PAR+  +VA LP D  +EIE I
Sbjct:    1 MTKVIHTDNAPAAIGPYVQAVDLGNMLLTSGQIPVNPKTGEVPADIVA-QARQSLENVKAIVEQAGLQVANIVKTTVFVKDLNDFAAVNAEYERFFKENNHPSFPARSCVEVARLPKDVGIEIEAI 125          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y719_HAEIN (UPF0076 protein HI0719 OS=Haemophilus influenzae GN=HI0719 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS----PAPARATYQVAALPLDARVEIECI 601
            + + + T KAPAA+GPY QA+   NL   SG + + P TG+  +D +  Q  Q L+N+  I++ +G   + +VKTT+ + DL DF  VN  Y ++F        PAR+  +VA LP D  +EIE I
Sbjct:    2 MTQIIHTEKAPAAIGPYVQAVDLGNLVLTSGQIPVNPATGEVPADIVA-QARQSLENVKAIIEKAGLTAADIVKTTVFVKDLNDFAAVNAEYERFFKENNHPNFPARSCVEVARLPKDVGLEIEAI 126          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y334_BUCBP (UPF0076 protein bbp_334 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_334 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 44/119 (36.97%), Postives = 72/119 (60.50%), Query Frame = 2
Query:  254 TNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECI 601
            T+K+P  +GPYSQAI+  N  F+SG +         ++  I  QT+ +L+NI  IL++   +  ++VKTTI + +L D   VN++Y K+F       PAR+  +V+ LP +A++EI+ I
Sbjct:    7 THKSPKPIGPYSQAIQIKNFTFLSGQISQTDN----INTNISFQTQSILQNINYILESKEMNVGNIVKTTIFITNLNDLTIVNDVYQKFFLKYTKTFPARSCVEVSKLPKNAKIEIDAI 121          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y359_BUCAP (UPF0076 protein BUsg_359 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_359 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECI 601
            V T  AP  +GPYSQAIK  N   +SG + +  ++GK + + I +QT  VLKNI  I+ AS      ++K T+   +L+    +NEIY K+F    S  P R+  +V  LP + ++E+E +
Sbjct:    5 VNTENAPKPIGPYSQAIKNENFLIISGQIPIDVKSGK-IPNNISEQTYIVLKNIKSIIIASKYTIQDIIKITVFTTNLEKIHIINEIYEKFFIDNKSSFPTRSCIEVQKLPKNVKIEMEAM 124          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: Y371_BUCAI (UPF0076 protein BU371 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU371 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECI 601
            +   + T  AP  +GPYSQA+K +N   +SG + +   + + + + I +QT  VLKNI  IL  +     +++KTT+   DLK    +NEIY K+F    S  PAR+  +V  LP + ++EIE +
Sbjct:    1 MNHIIETKDAPKPIGPYSQALKIDNFIILSGQIPIDVISNQ-IPENIAEQTYLVLKNIKLILVHAKFQVHNIIKTTVFTTDLKKINIINEIYKKFFIDNKSNFPARSCVEVQKLPKNVKIEIEAM 124          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: RUTC_ECOLI (UPF0076 protein rutC OS=Escherichia coli (strain K12) GN=rutC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  239 KEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 601
            K  ++   + A L P+     A+ + +VSG L          +D  + QT  VL+ I ++++ +G   + V   +I + D K++  +NEIYA++FP   PAR   Q   +  DA VEI  I
Sbjct:    3 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATI 123          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: RUTC_ECOL6 (UPF0076 protein rutC OS=Escherichia coli O6 GN=rutC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  239 KEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 601
            K  ++   + A L P+     A+ + +VSG L          +D  + QT  VL+ I ++++ +G   + V   +I + D K++  +NEIYA++FP   PAR   Q   +  DA VEI  I
Sbjct:    3 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATI 123          
The following BLAST results are available for this feature:
BLAST of FC931789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
Y1466_PASMU9.472e-1837.30UPF0076 protein PM1466 OS=Pasteurella multocida GN... [more]
Y719_HAEIN1.616e-1738.89UPF0076 protein HI0719 OS=Haemophilus influenzae G... [more]
Y334_BUCBP5.198e-1636.97UPF0076 protein bbp_334 OS=Buchnera aphidicola sub... [more]
Y359_BUCAP7.505e-1537.19UPF0076 protein BUsg_359 OS=Buchnera aphidicola su... [more]
Y371_BUCAI9.802e-1536.00UPF0076 protein BU371 OS=Buchnera aphidicola subsp... [more]
RUTC_ECOLI1.014e-1130.58UPF0076 protein rutC OS=Escherichia coli (strain K... [more]
RUTC_ECOL61.014e-1130.58UPF0076 protein rutC OS=Escherichia coli O6 GN=rut... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201C01EF PostHarveN Citrus clementina cDNA clone C34201C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931789 ID=FC931789; Name=FC931789; organism=Citrus clementina; type=EST; length=706bp
GACTTCGCTCGAGGGAAACTGAGAGAGCAACAGCGACAAAGACGAAGACA
TGGCGTGGTGTTCATTACGGTCGTTGAATGTCCCAACCATCGACATGGGC
GCACTGCGCACCCGCTCTCGCTTAGCCGCCGTCGGAATCGGCTGCGCCTC
GGTCGCCGGGTCCAGCGTCTGGCGCTCTTCTTGCAAGAAACACTCCACTC
CCTTTGCTTGCTTATCCACTTCCGCCGTTTCTAATTTGAAGGAGGCTGTT
GTGACTAACAAGGCTCCAGCAGCATTGGGACCTTATTCTCAGGCCATCAA
AGCAAATAACCTCTTTTTTGTCTCTGGGGTTCTTGGCTTAGTTCCAGAGA
CTGGGAAATTTGTCTCAGATACTATAGAGGACCAGACAGAGCAGGTTCTT
AAAAATATTGGGGAAATACTGAAAGCTAGCGGCGCTGACTATTCCTCTGT
GGTTAAGACAACAATTTTGTTGGCAGACTTGAAAGACTTCAAGACAGTGA
ATGAGATCTATGCTAAATACTTTCCTTCACCAGCTCCAGCACGTGCAACA
TATCAAGTAGCAGCACTGCCGTTGGATGCCAGGGTTGAGATTGAATGCAT
TGTAGCCCTTCCCAATTCTTGATTGGGGTGAAATTCTTCCAGGATAATCG
AATAGAGGGGAAGAAAGCACACCTTTGAGGACAGGATTTTGGAGGCATTT
TCTCAT
back to top