BG732222

Overview
NameBG732222
Unique NameBG732222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12756 contig Csv1_Contig12756:88..538. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BG732222 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.869e-11
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  178 KLEPERKVKLAQELGLQPRQVAVWFQNRRARWRTKQLERDYGVLKANYDALKLNYDSLQHD----NEALL---KEIRELKS 399
            KLE  RKV LA ELGL P+QVAVWFQNRRAR ++K LE ++  LK  +DA  L+   L+++     E L+   +E+R L+S
Sbjct:   83 KLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRLRS 163          
BLAST of BG732222 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.869e-11
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  178 KLEPERKVKLAQELGLQPRQVAVWFQNRRARWRTKQLERDYGVLKANYDALKLNYDSLQHD----NEALL---KEIRELKS 399
            KLE  RKV LA ELGL P+QVAVWFQNRRAR ++K LE ++  LK  +DA  L+   L+++     E L+   +E+R L+S
Sbjct:   83 KLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRLRS 163          
BLAST of BG732222 vs. ExPASy Swiss-Prot
Match: ATB52_ARATH (Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.437e-11
Identity = 31/76 (40.79%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  172 KLEPERKVKLAQELGLQPRQVAVWFQNRRARWRTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 399
            KLEP+ K++L+ +LGL  RQVAVWFQN+RAR++T+ LE  +  L++ ++A   +   L+H  + L  E++  +++L
Sbjct:   32 KLEPDLKLQLSNQLGLPQRQVAVWFQNKRARFKTQSLEVQHCTLQSKHEAALSDKAKLEHQVQFLQDELKRARNQL 107          
BLAST of BG732222 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  172 KLEPERKVKLAQELGLQPRQVAVWFQNRRARWRTKQLERDYGVLKANYDALKLNYDSLQHDNEAL---LKEIRELKSKL 399
            KLE  RKV+LA ELGL  +QVAVWFQNRRAR ++K +E ++  L++ +DA+ L    L+ +   L   L ++ E K+KL
Sbjct:   82 KLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKL 160          
BLAST of BG732222 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  172 KLEPERKVKLAQELGLQPRQVAVWFQNRRARWRTKQLERDYGVLKANYDALKLNYDSLQHDNEAL---LKEIRELKSKL 399
            KLE  RKV+LA ELGL  +QVAVWFQNRRAR ++K +E ++  L++ +DA+ L    L+ +   L   L ++ E K+KL
Sbjct:   82 KLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKL 160          
The following BLAST results are available for this feature:
BLAST of BG732222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
HOX14_ORYSJ1.869e-1149.38Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX14_ORYSI1.869e-1149.38Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
ATB52_ARATH5.437e-1140.79Homeobox-leucine zipper protein ATHB-52 OS=Arabido... [more]
HOX12_ORYSJ7.102e-1146.84Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HOX12_ORYSI7.102e-1146.84Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCs-1f Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-1f, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG732222 ID=BG732222; Name=BG732222; organism=Citrus sinensis; type=EST; length=450bp
GGAAGCAGCTAGAGAAATTGCGGTAGCGTTAGTAGGAGGAGCTACATCGG
CGGCTTGTTTATCATCGCTTTCTTGATTGCGATCGAGAGTGGCTTTGTTT
TGATGATCAGTCTCATGCACAATTGTCTCTTCTTGTTTCACAGAAATATT
GCTCTCCGTGTTCTCTTCATTCAGCTTTGATTTCAGCTCTCTTATCTCTT
TAAGCAAGGCTTCATTGTCGTGTTGGAGGGAGTCATAATTGAGCTTGAGA
GCATCATAATTTGCCTTAAGAACGCCGTAATCTCTTTCAAGTTGCTTGGT
TCTCCAACGAGCGCGTCGGTTTTGGAACCAAACAGCAACTTGTCTTGGCT
GCAGCCCAAGTTCTTGTGCCAACTTCACTTTTCTCTCGGGCTCAAGCTTG
TTTCCACCTCGAAGTTCTTCTCCAAGGCCTTCACCTGATCCACGGTCACT
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