BQ622914

Overview
NameBQ622914
Unique NameBQ622914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6216 contig Csv1_Contig6216:82..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622914 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 3
Query:   60 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG--SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 365
            RL+ + T  GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G  +  R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of BQ622914 vs. ExPASy Swiss-Prot
Match: RL35A_ICTPU (60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 3
Query:   60 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG--SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 365
            RL+ +    GYKR   NQ  +T+L+++EGV ++ +V +Y GKR AY+YKAK   V   G  +  R IWGKV R HGNSG+VRAKF SNLPPK++G R+RV +YPS +
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110          
BLAST of BQ622914 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 3
Query:   60 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG--SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 365
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G  +  R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of BQ622914 vs. ExPASy Swiss-Prot
Match: RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 3
Query:   60 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG--SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 365
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G  +  R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of BQ622914 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.547e-24
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 3
Query:   60 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG--SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 365
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G  +  R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of BQ622914 vs. ExPASy Swiss-Prot
Match: RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.547e-24
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 3
Query:   60 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG--SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 365
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G  +  R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of BQ622914 vs. ExPASy Swiss-Prot
Match: RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.547e-24
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 3
Query:   60 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG--SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 365
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G  +  R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of BQ622914 vs. ExPASy Swiss-Prot
Match: RL35A_BOVIN (60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.633e-24
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 3
Query:   60 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG--SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 365
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G  +  R IWGK+ R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
The following BLAST results are available for this feature:
BLAST of BQ622914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL35A_XENLA5.473e-2553.2760S ribosomal protein L35a OS=Xenopus laevis GN=rp... [more]
RL35A_ICTPU5.473e-2552.3460S ribosomal protein L35a OS=Ictalurus punctatus ... [more]
RL35A_RAT2.716e-2452.3460S ribosomal protein L35a OS=Rattus norvegicus GN... [more]
RL35A_MOUSE2.716e-2452.3460S ribosomal protein L35a OS=Mus musculus GN=Rpl3... [more]
RL35A_PONAB3.547e-2452.3460S ribosomal protein L35a OS=Pongo abelii GN=RPL3... [more]
RL35A_MACFA3.547e-2452.3460S ribosomal protein L35a OS=Macaca fascicularis ... [more]
RL35A_HUMAN3.547e-2452.3460S ribosomal protein L35a OS=Homo sapiens GN=RPL3... [more]
RL35A_BOVIN4.633e-2451.4060S ribosomal protein L35a OS=Bos taurus GN=RPL35A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00005 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00005 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622914 ID=BQ622914; Name=BQ622914; organism=Citrus sinensis; type=EST; length=668bp
TGCAGAGCTTGTTGTGTTGTTCAGTCAAAATGGTCAAGGGACGACAAGGA
GAGCGAGTCAGACTCTATGTCAGAGGAACCATCCTCGGATACAAGAGGTC
AAAGTCCAACCAGTACCCAAACACTTCATTGATTCAAATTGAGGGAGTGA
ACACCAAGGAAGATGTGTCATGGTACTGTGGGAAGCGTATGGCTTACATT
TACAAGGCTAAAGTGAAGAAGAATGGATCACACTATCGTTGCATCTGGGG
CAAGGTCGCAAGGCCTCATGGAAACAGTGGGGTTGTTCGTGCTAAATTCA
AGTCCAATCTGCCTCCAAAGTCCATGGGAGACAGAGTTAGGGTCTTCATG
TACCCCAGCAACATCTGAGGTCCTTCGGCCCATATATGTCAGATTGAGGT
TGTTGACAGCTCGAAGGAATCTGCTTTTTAACTTGTGTTATAAGCTAGAT
TTGAATTCATGTGTGTTATGGAGCTGAATCATTTTTGTTTCATTAGGATA
GTAAATGAGACATTATTTTCGCTAAAACTTATGTCAGAATTTTTTGCCCC
AGCTGTTTCTATCTTATTGCATATTTGGGCGATTTACATTGTTGATCTAA
AACTTCAGTCAGATTCTAGCAACCAAATTCTGCTATTATTTCAAAAAAAA
AAAAAAAAAAAAAAAAAC
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