BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SYNJB (30S ribosomal protein S9 OS=Synechococcus sp. GN=rpsI PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.887e-35
Identity = 79/125 (63.20%), Postives = 88/125 (70.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV L  GTGK IIN R   +YLQ     L  +K PL  LG E SYD+ V+AHGGG+ GQA AI LGVARAL +V   +R PLK EG L RD R VERKK GL KARKAPQYSKR
Sbjct:   12 WGTGRRKTAVARVRLVPGTGKIIINDRPGDQYLQYQEALLASVKGPLEILGLENSYDILVRAHGGGVHGQADAIKLGVARALCEVDPANRGPLKVEGYLKRDPRAVERKKYGLRKARKAPQYSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CYAP7 (30S ribosomal protein S9 OS=Cyanothece sp. (strain PCC 7424) GN=rpsI PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.689e-35
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  GTG+  +N +    Y      +LQ IK PL TLG E  YD+ VKAHGGGL+GQA A+ LGVARAL +++ ++R PLK EG LTRD R  ERKK GLHKARKAPQYSKR
Sbjct:   13 WGTGRRKTSVARVRLIPGTGQVTVNGKPGDTYFNRIADYLQGIKAPLETLGLENEYDILVKAHGGGLTGQADAVKLGVARALCELAPENRQPLKSEGYLTRDPRAKERKKYGLHKARKAPQYSKR 137          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_MESVI (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride GN=rps9 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.004e-34
Identity = 78/124 (62.90%), Postives = 90/124 (72.58%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  G G+ IIN      YLQ N  +L  ++ PL TLG E +YD+ VKA GGGL+GQA+AI LGVARAL  +   +R PLKKEG LTRDSRV ERKK GL KARKAPQ+SKR
Sbjct:   14 GTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIVKAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAPQFSKR 137          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SYNY3 (30S ribosomal protein S9 OS=Synechocystis sp. (strain PCC 6803) GN=rpsI PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.984e-34
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK AIARV L  G G+ I+N +  + Y      ++Q +K PL TLG E  Y++ V AHGGGL+GQA A+ LGVARAL ++S ++R PLK EG LTRD R  ERKK GLHKARKAPQYSKR
Sbjct:   13 WGTGRRKAAIARVRLVPGQGEVIVNGKPGEIYFNRIANYIQSLKAPLETLGLEGEYNILVNAHGGGLTGQADAVKLGVARALCQLSPENRQPLKAEGYLTRDPRAKERKKYGLHKARKAPQYSKR 137          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CYAP4 (30S ribosomal protein S9 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpsI PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.501e-34
Identity = 74/127 (58.27%), Postives = 88/127 (69.29%), Query Frame = 2
Query:  101 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            T  GTGRRK ++ARV L  GTG+  IN +  + YLQ NP +L   K PL +LG E  YD+ V   GGGL+GQA +I LGVARAL ++  ++R PLK EG LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   11 TYIGTGRRKSSVARVRLVPGTGQLTINGKSGELYLQFNPTYLAIAKAPLESLGLENDYDILVNTSGGGLTGQADSIRLGVARALCQLDPENRKPLKVEGYLTRDPRAKERKKYGLRKARKAPQYSKR 137          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PROM4 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.510e-33
Identity = 74/125 (59.20%), Postives = 87/125 (69.60%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  GTGK  IN R    YL  NP +L  +K PL TLG   SYDV V  +GGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:   13 WGTGRRKTSVARVRLIPGTGKITINGRPGDHYLNFNPAYLAAVKAPLQTLGLSDSYDVLVNVYGGGLTGQADAIKQGAARALCELSADNRKPLKIEGHLSRDPRAKERRKYGLKKARKAPQFSKR 137          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_GRATL (30S ribosomal protein S9, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps9 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.510e-33
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK +IARV L  G+GK IIN    + YLQ +P +L+    PL  LG    YD++VK  GGGL+GQA AI LG+ARAL +++ D+R+ LK EG LTRD+R+ ERKK GL KARKAPQYSKR
Sbjct:   14 GTGRRKTSIARVKLVPGSGKLIINGLPGESYLQFSPNYLRVSYSPLKILGLNKEYDIYVKTEGGGLTGQANAIRLGLARALCRMNPDNRTTLKAEGFLTRDARIKERKKYGLRKARKAPQYSKR 137          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PROM9 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.197e-33
Identity = 74/125 (59.20%), Postives = 87/125 (69.60%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G+  IN R   +YL  NPL L  IK PL TLG E SYD+ V   GGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:   12 WGTGRRKTSVARVRLIPGNGQIKINGRSGDDYLNFNPLHLNSIKAPLQTLGLENSYDILVNVFGGGLTGQADAIKQGAARALCELSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PROM3 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.197e-33
Identity = 73/125 (58.40%), Postives = 85/125 (68.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  GTG   IN R    YL  NP +L  +K PL TLG    YDV V  HGGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:   11 WGTGRRKTSVARVRLVPGTGTITINGRPGDHYLNFNPAYLAAVKAPLQTLGLNEQYDVLVNVHGGGLTGQADAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 135          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PROM2 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpsI PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.228e-32
Identity = 73/125 (58.40%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G   IN R   +YL  NPL L  +K PL TLG E SYD+ V   GGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:   12 WGTGRRKTSVARVRLIPGNGLITINGRSGDDYLNFNPLHLNSVKAPLQTLGLENSYDILVNVFGGGLTGQADAIKQGAARALCELSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 136          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_SYNJB5.887e-3563.2030S ribosomal protein S9 OS=Synechococcus sp. GN=r... [more]
RS9_CYAP77.689e-3560.0030S ribosomal protein S9 OS=Cyanothece sp. (strain... [more]
RR9_MESVI1.004e-3462.9030S ribosomal protein S9, chloroplastic OS=Mesosti... [more]
RS9_SYNY34.984e-3459.2030S ribosomal protein S9 OS=Synechocystis sp. (str... [more]
RS9_CYAP48.501e-3458.2730S ribosomal protein S9 OS=Cyanothece sp. (strain... [more]
RS9_PROM45.510e-3359.2030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RR9_GRATL5.510e-3358.8730S ribosomal protein S9, chloroplastic OS=Gracila... [more]
RS9_PROM97.197e-3359.2030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_PROM37.197e-3358.4030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_PROM21.228e-3258.4030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
back to top