BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRPI (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRP7 (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain 70585) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRP4 (30S ribosomal protein S9 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRP2 (30S ribosomal protein S9 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MYCMM (30S ribosomal protein S9 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 69/122 (56.56%), Postives = 81/122 (66.39%), Query Frame = 2 
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK A+ RV L  G+GKF +N R  + Y   N +  Q IK PLVT+    SYD+F   HGGG SGQA A+ LG+ARAL+  + + R  LKK G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   32 GRRKEAVVRVRLVPGSGKFDLNGRSLEAYFP-NKVHQQLIKAPLVTVDRLESYDIFALLHGGGPSGQAGALRLGIARALIVANPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 152
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOD6 (30S ribosomal protein S9 OS=Clostridium difficile (strain 630) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 67/125 (53.60%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G  ++N R  + Y     L ++ +K PLV  G E  YDV VK  GGG +GQA AI  G++RALLK   D R  LKKEG LTRD+R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVAGEGNILVNGRALENYFNYETL-IRDVKQPLVLTGNENKYDVIVKVEGGGFTGQAGAIRHGISRALLKADLDLRPALKKEGFLTRDARMKERKKYGLKAARRAPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_AYWBP (30S ribosomal protein S9 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            FGTGRRK ++ARV+L  GTGK  IN RD ++YL      L+ I+ PL        +DV V  +GGGLS QA AI LG+ARAL++   + R+ LKK GLLTRD+R VERKK GL KAR+APQ+SKR
Sbjct:    7 FGTGRRKSSVARVILTNGTGKITINTRDFEKYLPLPATRLEMIQ-PLELTEKREVFDVSVNVNGGGLSAQAGAIRLGIARALIESIPELRAILKKSGLLTRDARCVERKKYGLKKARRAPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRTD (30S ribosomal protein S9 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 70/124 (56.45%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDV V   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDLEEYIPHADLRL-VINQPFAVTSTEGSYDVHVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRT2 (30S ribosomal protein S9 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 70/124 (56.45%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDV V   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDLEEYIPHADLRL-VINQPFAVTSTEGSYDVHVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRT1 (30S ribosomal protein S9 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 70/124 (56.45%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDV V   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDLEEYIPHADLRL-VINQPFAVTSTEGSYDVHVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_STRPI4.086e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRP74.086e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRP44.086e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRP24.086e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_MYCMM4.086e-2856.5630S ribosomal protein S9 OS=Mycobacterium marinum ... [more]
RS9_CLOD64.086e-2853.6030S ribosomal protein S9 OS=Clostridium difficile ... [more]
RS9_AYWBP4.086e-2856.0030S ribosomal protein S9 OS=Aster yellows witches'... [more]
RS9_STRTD5.337e-2856.4530S ribosomal protein S9 OS=Streptococcus thermoph... [more]
RS9_STRT25.337e-2856.4530S ribosomal protein S9 OS=Streptococcus thermoph... [more]
RS9_STRT15.337e-2856.4530S ribosomal protein S9 OS=Streptococcus thermoph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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