BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_NOCSJ (30S ribosomal protein S9 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rpsI PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 70/124 (56.45%), Postives = 84/124 (67.74%), Query Frame = 2
Query:  113 TGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSP-LKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            TGRRK A+ARV L  GTG++ +N R    Y   N L  Q +  P VT   E  +DV  + HGGG++GQA A+ LGVARAL  V  +   P LKK GLLTRD+RV+ERKKAGL KARKAPQ+SKR
Sbjct:   44 TGRRKEAVARVRLVPGTGEWTVNGRTLDSYFP-NKLHQQVVNEPFVTTQLEGRFDVIARIHGGGITGQAGALRLGVARALNAVDVEANRPSLKKAGLLTRDARVIERKKAGLKKARKAPQFSKR 166          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BACSK (30S ribosomal protein S9 OS=Bacillus clausii (strain KSM-K16) GN=rpsI PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G GK ++N RD  EY     L L  +K PLV  G    YDV V  +GGG +GQA AI  G+ARALL+V  D+R+ LK  G LTRD+R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKHSVARVRLIPGEGKIVVNGRDLDEYFGLETLKL-IVKQPLVETGVTGQYDVHVNVNGGGFTGQAGAIRHGIARALLQVDPDNRATLKAAGFLTRDARMKERKKYGLKAARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_LISW6 (30S ribosomal protein S9 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsI PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.189e-27
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G GK +IN RD ++Y+    L  + IK PLV      +YDV V   GGG +GQA AI  GVARALL+V+ ++R  LK  GLLTRDSR+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAAL-REVIKQPLVATETLGNYDVLVNVRGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_ENTFA (30S ribosomal protein S9 OS=Enterococcus faecalis GN=rpsI PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.189e-27
Identity = 68/124 (54.84%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L  + I  P      + +YDV V  +GGG +GQ+ AI  G+ARALL+V  D RS LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADL-REVINQPFGVTETKGAYDVIVNVNGGGYAGQSGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOTE (30S ribosomal protein S9 OS=Clostridium tetani GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK +IARV L  G GK +IN RD +EY     L +  +  PLV  G +  +DV V  +GGGL+GQA AI  G++RALLK  +  R  LKK G LTRD R+ ERKK GL KAR+APQ+SKR
Sbjct:    7 YGTGRRKKSIARVRLVPGEGKVLINKRDEEEYFGLETLRV-IVNQPLVLTGTKDKFDVLVNVYGGGLTGQAGAIRHGISRALLKADESLRPELKKAGFLTRDPRMKERKKYGLKKARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BACP2 (30S ribosomal protein S9 OS=Bacillus pumilus (strain SAFR-032) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G+ ++N R+  EY+    L ++ +K PL       SYDV V  HGGG SGQA AI  G++RALL+V  ++R+ LK+ GLLTRD R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVPGEGRIVVNNREITEYIPFAAL-IEDVKQPLNITETANSYDVLVTVHGGGFSGQAGAIRHGISRALLEVDPEYRTSLKRAGLLTRDPRMKERKKYGLKGARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_AERHH (30S ribosomal protein S9 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 62/130 (47.69%), Postives = 85/130 (65.38%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+GK +IN R  ++Y  G P     ++ PL  +      D+++  +GGG+SGQA AI  G+ RAL++  +  RS L+K G +TRD+R VERKK GLHKARK PQYSKR
Sbjct:    2 AENQYYGTGRRKSSTARVFIKAGSGKIVINQRSLEQYF-GRPTARMVVRQPLELVEMTEKLDLYITVNGGGISGQAGAIRHGITRALMQYDETLRSELRKAGFVTRDARKVERKKVGLHKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CYTH3 (30S ribosomal protein S9 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 2
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK ++ARV LQ G G  ++N  D K Y +  PL +  ++ PL  +     YD+ V   GGG++GQA+AI LG+ARAL+ V+ + +SPL+KEGL+TRDSR+VERKK G  KARK  Q+SKR
Sbjct:    8 GRRKTSVARVYLQSGKGSIVVNGLDFKTYFKTEPLQIS-VESPLNLVAEAGKYDINVNVQGGGVTGQAEAIRLGIARALVLVNSEFKSPLRKEGLMTRDSRMVERKKYGKRKARKRFQFSKR 128          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_THET8 (30S ribosomal protein S9 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpsI PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 65/125 (52.00%), Postives = 85/125 (68.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV L+ G GK  +N +D  EY QG    +  ++ PL  +     +D ++   GGG SGQ  AI LG+ARAL++ + D+R+ LK  G LTRD+RVVERKK G HKAR+APQYSKR
Sbjct:    5 YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALE-PLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR 128          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_THET2 (30S ribosomal protein S9 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsI PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 65/125 (52.00%), Postives = 85/125 (68.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV L+ G GK  +N +D  EY QG    +  ++ PL  +     +D ++   GGG SGQ  AI LG+ARAL++ + D+R+ LK  G LTRD+RVVERKK G HKAR+APQYSKR
Sbjct:    5 YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALE-PLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR 128          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_NOCSJ9.104e-2856.4530S ribosomal protein S9 OS=Nocardioides sp. (stra... [more]
RS9_BACSK9.104e-2854.4030S ribosomal protein S9 OS=Bacillus clausii (stra... [more]
RS9_LISW61.189e-2755.2030S ribosomal protein S9 OS=Listeria welshimeri se... [more]
RS9_ENTFA1.189e-2754.8430S ribosomal protein S9 OS=Enterococcus faecalis ... [more]
RS9_CLOTE1.553e-2754.4030S ribosomal protein S9 OS=Clostridium tetani GN=... [more]
RS9_BACP21.553e-2752.0030S ribosomal protein S9 OS=Bacillus pumilus (stra... [more]
RS9_AERHH1.553e-2747.6930S ribosomal protein S9 OS=Aeromonas hydrophila s... [more]
RS9_CYTH32.028e-2751.6430S ribosomal protein S9 OS=Cytophaga hutchinsonii... [more]
RS9_THET82.649e-2752.0030S ribosomal protein S9 OS=Thermus thermophilus (... [more]
RS9_THET22.649e-2752.0030S ribosomal protein S9 OS=Thermus thermophilus (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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