BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SYNPX (30S ribosomal protein S9 OS=Synechococcus sp. (strain WH8102) GN=rpsI PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 70/125 (56.00%), Postives = 85/125 (68.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G   IN R    YL  NP ++  +K PL TLG  T YD+ V  HGGGL+GQ+ AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:    9 WGTGRRKTSVARVRLVPGNGTITINGRPGDNYLNYNPAYIAAVKAPLETLGLGTEYDILVNVHGGGLTGQSGAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 133          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PROMP (30S ribosomal protein S9 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 73/125 (58.40%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G+  IN R   +YL  NP  L  +K PL+TLG E SYD+FV   GGGL+GQA AI  G ARAL  +S D+R PLK EG L+RD R  ERKK GL KARKA Q+SKR
Sbjct:   12 WGTGRRKTSVARVRLIPGNGQIKINGRSGDDYLNFNPSHLNSVKAPLLTLGLENSYDIFVNVFGGGLTGQADAIKQGAARALCGLSPDNRKPLKTEGHLSRDPRSKERKKYGLKKARKAGQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_GUITH (30S ribosomal protein S9, chloroplastic OS=Guillardia theta GN=rps9 PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 70/124 (56.45%), Postives = 90/124 (72.58%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTG RK AIARV L  G+G   +N    + Y Q +P +++  K PL TLG E  Y+++V AHGGGL+GQ +AI LG+ARAL K++ ++R+ LK EG LTRDSR+ ERKK GL KARKAPQ+SKR
Sbjct:   11 GTGHRKQAIARVYLTPGSGLIEVNGIKGELYFQYSPNYIRLSKSPLTTLGLENKYNIYVNAHGGGLTGQVEAIRLGLARALCKLNPENRTALKFEGYLTRDSRITERKKYGLKKARKAPQFSKR 134          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SYNSC (30S ribosomal protein S9 OS=Synechococcus sp. (strain CC9605) GN=rpsI PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G   IN R    YL  NP ++  +K PL TLG  + YD+ V  HGGGL+GQ+ AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:    9 WGTGRRKTSVARVRLVPGNGTITINGRPGDNYLNYNPSYIAAVKAPLETLGLSSEYDILVNVHGGGLTGQSGAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 133          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_PORYE (30S ribosomal protein S9, chloroplastic OS=Porphyra yezoensis GN=rps9 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRKC++A+V L  G+G  IIN    + YLQ +P +L+    PL  LG    YD+ V A GGGL+GQA AI LGVARAL  ++ ++R+ LK EG LTRD RV ERKK GL KARKAPQ+SKR
Sbjct:   14 GTGRRKCSVAQVRLVPGSGNLIINGIPGESYLQFSPNYLRVSYAPLQVLGLLNQYDIHVNARGGGLTGQADAIRLGVARALCSINPENRTTLKSEGYLTRDPRVKERKKYGLKKARKAPQFSKR 137          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_PORPU (30S ribosomal protein S9, chloroplastic OS=Porphyra purpurea GN=rps9 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.315e-31
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRKC++A+V L  G+G  +IN    + YLQ +P +L+    PL  LG    YD+ V A GGGL+GQA AI LGVARAL  ++ ++RS LK EG LTRD +V ERKK GL KARKAPQ+SKR
Sbjct:   14 GTGRRKCSVAQVRLVPGSGNLVINGIPGESYLQFSPNYLRVSYAPLQVLGLLNQYDIHVNARGGGLTGQADAIRLGVARALCSINPENRSALKSEGYLTRDPKVKERKKYGLKKARKAPQFSKR 137          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_CYAPA (30S ribosomal protein S9, cyanelle OS=Cyanophora paradoxa GN=rps9 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 72/133 (54.14%), Postives = 92/133 (69.17%), Query Frame = 2
Query:   86 GFAAQTI-FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G   QT+ +GTGRRK ++A+V L  G G+ +IN + A  YLQ N  +L  +K PL +LG    Y+V V   GGGL+GQ++AI LG+ARAL ++S  HR  LK +  LTRD+R  ERKK GLHKARKAPQYSKR
Sbjct:    2 GQKEQTLAYGTGRRKTSVAKVRLIPGKGEILINSKPANLYLQYNLSYLAAVKSPLESLGLANEYNVIVNTQGGGLTGQSEAIRLGLARALCQISLTHRPLLKSDHHLTRDARAKERKKYGLHKARKAPQYSKR 134          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_KOSOT (30S ribosomal protein S9 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30
Identity = 70/127 (55.12%), Postives = 92/127 (72.44%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIIN---YRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L+ G GKFI+N    +D KEYL  N  W+++   P V       +D+F++  GGGLSGQA AI LG+ARALL+ ++D +  LK+ GLLTRD+R+VERKK GL KAR+APQ+SKR
Sbjct:    9 GTGRRKTSVARVRLRPGEGKFIVNGKELKDLKEYLH-NDAWVRHALKPAVLTDTLGRFDIFIRVSGGGLSGQAGAIRLGIARALLQFNEDLKPLLKQNGLLTRDARIVERKKYGLKKARRAPQFSKR 134          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_OLTVI (30S ribosomal protein S9, chloroplastic OS=Oltmannsiellopsis viridis GN=rps9 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.366e-30
Identity = 69/124 (55.65%), Postives = 83/124 (66.94%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+A+V L  G GK IIN +   +YL  N   +  I+ P      +  +D  VK HGGGLS QA AI LGVARAL +++  HR  LK  G LTRD+R+VERKKAGL KARKAPQ+SKR
Sbjct:    2 GTGRRKRAVAQVKLVAGEGKLIINGKPGFDYLHNNATAILSIQGPFQLFKLQKKFDTIVKVHGGGLSAQADAIKLGVARALCEINTSHRPVLKSNGYLTRDARIVERKKAGLKKARKAPQFSKR 125          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MYCHJ (30S ribosomal protein S9 OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=rpsI PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.659e-29
Identity = 70/125 (56.00%), Postives = 90/125 (72.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L+ G G+F IN R AKEYL+ + L    ++ PL      + +++ V AHGGG+SGQA AI LG+ARALLKVS D+R  LK  G+LTRD+R  ERKK GL KAR+A Q+SKR
Sbjct:    9 YGTGRRKSSVARVTLKHGNGQFKINNRVAKEYLKSDILIKDALQ-PLSITNTVSEFNIRVNAHGGGISGQAGAIRLGIARALLKVSADYRPGLKVAGMLTRDARAKERKKFGLRKARRARQFSKR 132          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_SYNPX7.957e-3256.0030S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_PROMP7.957e-3258.4030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RR9_GUITH7.957e-3256.4530S ribosomal protein S9, chloroplastic OS=Guillar... [more]
RS9_SYNSC1.773e-3155.2030S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RR9_PORYE1.773e-3157.2630S ribosomal protein S9, chloroplastic OS=Porphyr... [more]
RR9_PORPU2.315e-3156.4530S ribosomal protein S9, chloroplastic OS=Porphyr... [more]
RR9_CYAPA1.149e-3054.1430S ribosomal protein S9, cyanelle OS=Cyanophora p... [more]
RS9_KOSOT1.501e-3055.1230S ribosomal protein S9 OS=Kosmotoga olearia (str... [more]
RR9_OLTVI4.366e-3055.6530S ribosomal protein S9, chloroplastic OS=Oltmann... [more]
RS9_MYCHJ1.659e-2956.0030S ribosomal protein S9 OS=Mycoplasma hyopneumoni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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