BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CAMJE (30S ribosomal protein S9 OS=Campylobacter jejuni GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  101 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            T + TG+RK AIA+V ++ G+GK  +N  D   +L G+      +  PL+    ETS D+     GGG S QA+A+  G++RAL  +  D R+ LK +GLLTRDSR VERKK G  KAR++PQ+SKR
Sbjct:    3 TTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGLLTRDSRTVERKKYGRRKARRSPQFSKR 129          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CAMJD (30S ribosomal protein S9 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  101 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            T + TG+RK AIA+V ++ G+GK  +N  D   +L G+      +  PL+    ETS D+     GGG S QA+A+  G++RAL  +  D R+ LK +GLLTRDSR VERKK G  KAR++PQ+SKR
Sbjct:    3 TTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGLLTRDSRTVERKKYGRRKARRSPQFSKR 129          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CAMJ8 (30S ribosomal protein S9 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  101 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            T + TG+RK AIA+V ++ G+GK  +N  D   +L G+      +  PL+    ETS D+     GGG S QA+A+  G++RAL  +  D R+ LK +GLLTRDSR VERKK G  KAR++PQ+SKR
Sbjct:    3 TTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGLLTRDSRTVERKKYGRRKARRSPQFSKR 129          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_ALHEH (30S ribosomal protein S9 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A Q  +GTGRRK + ARV L+ G+G   +N R   EY  G       ++ PL  +     +DV V   GGG SGQA AI  G+ RAL++  +  + PL K G +TRD+R+VERKK GLHKAR+A Q+SKR
Sbjct:    2 AEQQYYGTGRRKTSSARVFLRPGSGDIKVNGRSLDEYF-GRETARMIVRQPLELVDATEQFDVQVTVAGGGPSGQAGAIRHGITRALVQYDEALKQPLSKAGYVTRDARMVERKKIGLHKARRATQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_VIBFM (30S ribosomal protein S9 OS=Vibrio fischeri (strain MJ11) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ GTG  +IN R  + Y  G P     +  PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGTGNIVINKRSLEVYF-GRPTARMVVNQPLELVEMTDKLDLYITVSGGGISGQAGAIRHGITRALMQYDESLRPALRAAGYVTRDARCVERKKVGLRKARRKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_VIBF1 (30S ribosomal protein S9 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ GTG  +IN R  + Y  G P     +  PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGTGNIVINKRSLEVYF-GRPTARMVVNQPLELVEMTDKLDLYITVSGGGISGQAGAIRHGITRALMQYDESLRPALRAAGYVTRDARCVERKKVGLRKARRKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_NITEU (30S ribosomal protein S9 OS=Nitrosomonas europaea GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A Q  +GTGRRK A+ARV ++ GTG   +N++ A EY          I+ PL   G  ++ D+ V  HGGG SGQA A+  G+ RAL+   +  +  L K G +TRD+R VERKK GL KAR+  Q+SKR
Sbjct:    2 AIQYNYGTGRRKSAVARVFIKPGTGVITVNHKPADEYFS-RETGRMIIRQPLELTGNTSNLDIMVNIHGGGESGQAGAVRHGITRALIGYDETLKPILSKAGFVTRDAREVERKKVGLRKARRRKQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MARAV (30S ribosomal protein S9 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+G   IN R  +++  G       ++ PLV    E  +D+ +   GGG+SGQA AI  G+ RAL+   +  R  L+K G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKSSTARVFIKPGSGNISINGRTIEDFF-GRETLRMIVRQPLVVAESEDRFDIAITVKGGGISGQAGAIRHGLTRALMDYDETLRPALRKAGYVTRDARKVERKKVGLRKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAEIG (30S ribosomal protein S9 OS=Haemophilus influenzae (strain PittGG) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+GK  IN R+   Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGKITINQRELDVYF-GRETARMVVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAEIE (30S ribosomal protein S9 OS=Haemophilus influenzae (strain PittEE) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+GK  IN R+   Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGKITINQRELDVYF-GRETARMVVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_CAMJE1.360e-2346.4630S ribosomal protein S9 OS=Campylobacter jejuni G... [more]
RS9_CAMJD1.360e-2346.4630S ribosomal protein S9 OS=Campylobacter jejuni s... [more]
RS9_CAMJ81.360e-2346.4630S ribosomal protein S9 OS=Campylobacter jejuni s... [more]
RS9_ALHEH1.360e-2346.9230S ribosomal protein S9 OS=Alkalilimnicola ehrlic... [more]
RS9_VIBFM1.777e-2343.8530S ribosomal protein S9 OS=Vibrio fischeri (strai... [more]
RS9_VIBF11.777e-2343.8530S ribosomal protein S9 OS=Vibrio fischeri (strai... [more]
RS9_NITEU1.777e-2345.3830S ribosomal protein S9 OS=Nitrosomonas europaea ... [more]
RS9_MARAV1.777e-2346.4030S ribosomal protein S9 OS=Marinobacter aquaeolei... [more]
RS9_HAEIG1.777e-2345.6030S ribosomal protein S9 OS=Haemophilus influenzae... [more]
RS9_HAEIE1.777e-2345.6030S ribosomal protein S9 OS=Haemophilus influenzae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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