BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAEI8 (30S ribosomal protein S9 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+GK  IN R+   Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGKITINQRELDVYF-GRETARMVVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_AZOSB (30S ribosomal protein S9 OS=Azoarcus sp. (strain BH72) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV ++ G+G  ++N +   E+          ++ PLV  G E  +D+ V   GGG SGQA A+  G+ RAL+  S + +S L+  G +TRD+R VERKK GL KAR+A Q+SKR
Sbjct:    7 YGTGRRKTAVARVFIKPGSGNIVVNGKPVDEFFS-RETGRMIVRQPLVLTGNEGRFDIMVNVTGGGESGQAGAVRHGITRALIDYSAELKSELRAAGFVTRDAREVERKKVGLRKARRAKQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_XYLFT (30S ribosomal protein S9 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV L++G+G   +N R   E+  G       ++ PL      +++D+ + A GGG +GQA AI LG+ARAL++     +  L+K G +TRD R VERKK GLHKAR+A Q+SKR
Sbjct:    7 YGTGRRKSSTARVFLRKGSGNISVNGRPLDEFF-GRETARMIVRQPLELTKNVSNFDILITATGGGTTGQAGAIRLGIARALVEYDTSLKPELRKAGFMTRDPREVERKKVGLHKARRATQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_XYLF2 (30S ribosomal protein S9 OS=Xylella fastidiosa (strain M23) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV L++G+G   +N R   E+  G       ++ PL      +++D+ + A GGG +GQA AI LG+ARAL++     +  L+K G +TRD R VERKK GLHKAR+A Q+SKR
Sbjct:    7 YGTGRRKSSTARVFLRKGSGNISVNGRPLDEFF-GRETARMIVRQPLELTKNVSNFDILITATGGGTTGQAGAIRLGIARALVEYDTSLKPELRKAGFMTRDPREVERKKVGLHKARRATQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_VIBSL (30S ribosomal protein S9 OS=Vibrio splendidus (strain LGP32) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+G+ +IN R    Y  G P     +K PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGSGEIVINKRSLDVYF-GRPTSRMVVKQPLELVELTEKLDLYITVSGGGISGQAGAIRHGITRALMEYDETLRPALRAAGYVTRDARCVERKKVGLRKARRKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PASMU (30S ribosomal protein S9 OS=Pasteurella multocida GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+GK  IN RD   Y  G       ++ PL  +      D++V   GGG+SGQA AI  G+ RAL++  +  RS L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGKITINQRDLDVYF-GRETARMIVRQPLELVEMTEKLDLYVTVKGGGISGQAGAIRHGITRALIEYDESLRSVLRAAGFVTRDARQVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PARL1 (30S ribosomal protein S9 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G+G+  IN RD + Y    P+    +  PLV    E  YD+     GGGLSGQA AI  G++RAL       R  LKKEG LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   39 YATGKRKNAVARVWIKPGSGRVKINGRDLEVYF-ARPVLRMILNQPLVVAAREKQYDITATVVGGGLSGQAGAIRHGISRALTYFEPSLRGVLKKEGFLTRDSRVVERKKYGKAKARRSFQFSKR 162          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_LEPCP (30S ribosomal protein S9 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV +++GTGK I+N +  +EY  G    +   K PL       ++D+ V  HGGG SGQA A+  GV RAL+      +  L   G +TRD+R VERKK GLH AR+  Q+SKR
Sbjct:    7 YGTGRRKSSVARVFIKKGTGKIIVNGKTVEEYF-GRQTSIMICKQPLFLTNNAEAFDIKVNVHGGGESGQAGAVRHGVTRALIDYDAALKPELSNAGFVTRDAREVERKKVGLHGARRRKQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HYPNA (30S ribosomal protein S9 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 65/139 (46.76%), Postives = 83/139 (59.71%), Query Frame = 2
Query:   65 VKSRLPGGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            VKS  P   A    +GTGRRK A+ARV ++ G+GK IIN RD + Y    P+    I  PL+  G  T +DV     G GL GQA A+  G++RAL+      R+ LK  G +TRD RVVERKK G  KAR++ Q+SKR
Sbjct:   23 VKSVEPKIDAQGRAYGTGRRKEAVARVWIKPGSGKIIINGRDQETYF-ARPVLRMVIAQPLIEAGRATEFDVIATVKGSGLMGQAGAVRHGISRALVAYEPGLRAVLKPFGFMTRDPRVVERKKYGKAKARRSFQFSKR 160          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_DIAST (30S ribosomal protein S9 OS=Diaphorobacter sp. (strain TPSY) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L++G+GK  +N +D ++Y  G    +   K PL    +  ++D+ +  HGGG SGQA A   G+ RAL+      +  L + G +TRD+R VERKK GLH AR+A Q+SKR
Sbjct:    8 GTGRRKSSVARVFLKKGSGKITVNGKDIQQYF-GRETSIMIAKQPLALTNHVETFDIQINVHGGGESGQAGAARHGITRALIDYDATLKPALSQAGFVTRDAREVERKKVGLHSARRAKQFSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_HAEI81.777e-2345.6030S ribosomal protein S9 OS=Haemophilus influenzae... [more]
RS9_AZOSB1.777e-2344.8030S ribosomal protein S9 OS=Azoarcus sp. (strain B... [more]
RS9_XYLFT2.320e-2345.6030S ribosomal protein S9 OS=Xylella fastidiosa (st... [more]
RS9_XYLF22.320e-2345.6030S ribosomal protein S9 OS=Xylella fastidiosa (st... [more]
RS9_VIBSL2.320e-2343.8530S ribosomal protein S9 OS=Vibrio splendidus (str... [more]
RS9_PASMU2.320e-2346.4030S ribosomal protein S9 OS=Pasteurella multocida ... [more]
RS9_PARL12.320e-2349.6030S ribosomal protein S9 OS=Parvibaculum lavamenti... [more]
RS9_LEPCP2.320e-2345.6030S ribosomal protein S9 OS=Leptothrix cholodnii (... [more]
RS9_HYPNA2.320e-2346.7630S ribosomal protein S9 OS=Hyphomonas neptunium (... [more]
RS9_DIAST2.320e-2344.3530S ribosomal protein S9 OS=Diaphorobacter sp. (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
back to top