BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BUCAP (30S ribosomal protein S9 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV L+ G G+  +N R  K+Y  G       ++ PL  +    ++++++   GGG+SGQA AI  G+ RAL+K +   RS L+K G +TRDSR VERKK G  K+RK  Q+SKR
Sbjct:    7 YGTGRRKSSSARVFLRSGDGEITVNKRSLKDYF-GRETSCMVVRQPLELVDMMNNFNIYITVKGGGVSGQAGAIRQGITRALIKYNHLLRSELRKSGFVTRDSRQVERKKVGFRKSRKRTQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_ACISJ (30S ribosomal protein S9 OS=Acidovorax sp. (strain JS42) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L++G+GK  +N +D ++Y  G    +   K PL    +  ++D+ +  HGGG SGQA A   G+ RAL+      +  L + G +TRD+R VERKK GLH AR+A Q+SKR
Sbjct:    8 GTGRRKSSVARVFLKKGSGKITVNGKDIQQYF-GRETSIMIAKQPLALTNHVETFDIQINVHGGGESGQAGAARHGITRALIDYDATLKPALSQAGFVTRDAREVERKKVGLHSARRAKQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_XYLFA (30S ribosomal protein S9 OS=Xylella fastidiosa GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + AR+ L++G+G   +N R   E+  G       ++ PL       ++D+ + A GGG +GQA AI LG+ARAL++     +  L+K G +TRD+R VERKK GLHKAR+A Q+SKR
Sbjct:    7 YGTGRRKSSKARIFLRKGSGNITVNGRPLDEFF-GRETARMIVRQPLELTKNVANFDILITATGGGTTGQAGAIRLGIARALVEYDASLKPELRKAGFMTRDAREVERKKVGLHKARRATQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_TOLAT (30S ribosomal protein S9 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV  + G+G  +IN R  ++Y    P     +   L  +      D+++   GGG++GQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GLHKARK PQYSKR
Sbjct:    7 YGTGRRKSATARVFAKVGSGDIVINKRSLQDYFS-RPTARMVVMQALELVDMTGKLDLYITVAGGGITGQAGAIRHGITRALMQYDESLRPTLRKAGFVTRDARRVERKKVGLHKARKRPQYSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_RHOPT (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G GK  +N R+ + Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + RS LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   37 YATGKRKDAVARVWIKPGAGKITVNSREVETYF-ARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_RHOPA (30S ribosomal protein S9 OS=Rhodopseudomonas palustris GN=rpsI PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G GK  +N R+ + Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + RS LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   37 YATGKRKDAVARVWIKPGAGKITVNSREVETYF-ARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSEPW (30S ribosomal protein S9 OS=Pseudomonas putida (strain W619) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL++  +  R  L++ G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRPLDTFF-GRETARMVVRQPLELTESTEKFDIYVTVAGGGVSGQAGAIRHGITRALMEYDETLRGALRRAGYVTRDAREVERKKVGLRKARKRPQYSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSEPK (30S ribosomal protein S9 OS=Pseudomonas putida (strain KT2440) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL++  +  R  L++ G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRSLDVFF-GRETARMVVRQPLELTESVEKFDIYVTVSGGGVSGQAGAIRHGITRALMEYDETLRGALRRAGYVTRDAREVERKKVGLRKARKRPQYSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSEPG (30S ribosomal protein S9 OS=Pseudomonas putida (strain GB-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL++  +  R  L++ G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRSLDVFF-GRETARMVVRQPLELTETVEKFDIYVTVSGGGVSGQAGAIRHGITRALMEYDETLRGALRRAGYVTRDAREVERKKVGLRKARKRPQYSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSEP1 (30S ribosomal protein S9 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL++  +  R  L++ G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRSLDVFF-GRETARMVVRQPLELTESVEKFDIYVTVSGGGVSGQAGAIRHGITRALMEYDETLRGALRRAGYVTRDAREVERKKVGLRKARKRPQYSKR 130
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_BUCAP2.320e-2344.8030S ribosomal protein S9 OS=Buchnera aphidicola su... [more]
RS9_ACISJ2.320e-2344.3530S ribosomal protein S9 OS=Acidovorax sp. (strain... [more]
RS9_XYLFA3.031e-2344.8030S ribosomal protein S9 OS=Xylella fastidiosa GN=... [more]
RS9_TOLAT3.031e-2345.6030S ribosomal protein S9 OS=Tolumonas auensis (str... [more]
RS9_RHOPT3.031e-2348.0030S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_RHOPA3.031e-2348.0030S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_PSEPW3.031e-2347.2030S ribosomal protein S9 OS=Pseudomonas putida (st... [more]
RS9_PSEPK3.031e-2347.2030S ribosomal protein S9 OS=Pseudomonas putida (st... [more]
RS9_PSEPG3.031e-2347.2030S ribosomal protein S9 OS=Pseudomonas putida (st... [more]
RS9_PSEP13.031e-2347.2030S ribosomal protein S9 OS=Pseudomonas putida (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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