BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSEE4 (30S ribosomal protein S9 OS=Pseudomonas entomophila (strain L48) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL++  +  R  L++ G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRSLDVFF-GRETARMVVRQPLELTETVEKFDIYVTVSGGGVSGQAGAIRHGITRALMEYDETLRGALRRAGYVTRDAREVERKKVGLRKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_METPB (30S ribosomal protein S9 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 58/125 (46.40%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G G  ++N R  + Y    P+    ++ PL  +G    YD+ V   GGGLSGQA A+  G+++AL     + RSPLK+EG LTRD RVVERKK G  KAR++ Q+SKR
Sbjct:   38 YATGKRKDAVARVWIKPGNGTVVVNGRAVETYF-ARPVLRMILRQPLEIVGRVDQYDITVTVKGGGLSGQAGAVRHGLSKALTYYEPELRSPLKREGFLTRDPRVVERKKYGRKKARRSFQFSKR 161          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_LACBA (30S ribosomal protein S9 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK + ARV L  G+GK ++N +  ++Y+    +  + +  P        +YD  V   GGG SGQA A   G+ARALL+V  D R PLK+ GLLTRD+R+ ERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNSSARVRLVPGSGKIVMNNKAIEDYIPFASI-REVVLQPFNVTETLGNYDALVTVRGGGFSGQAGATRHGIARALLEVDPDFRGPLKRAGLLTRDARMKERKKPGLKKARKASQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAEPS (30S ribosomal protein S9 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV ++ G G   IN R  + Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    3 AANQNYGTGRRKSSSARVFIKPGNGNITINQRSLEVYF-GRETARMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALIEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR 131          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BRASO (30S ribosomal protein S9 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G+GK  +N RD + Y    P+    I+ P+V    +  YDV     GGGLSGQA A+  G+++AL     + RS LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   37 YATGKRKDAVARVWIKPGSGKVTVNTRDIEVYF-ARPVLRMMIEQPMVVAARKGQYDVICTVAGGGLSGQAGAVRHGLSKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BORAP (30S ribosomal protein S9 OS=Borrelia afzelii (strain PKo) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 57/124 (45.97%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV ++EG+G   +N RD   Y+Q   L    +  PLV       YD+++  +GGG+SGQ+ AI  G++RAL ++ + ++  L+  G LTRDSR VERKK G  KARK+ Q+SKR
Sbjct:   14 GTGRRKSSVARVYIREGSGNIKVNNRDFDSYIQLENLRTMALS-PLVLTNTLGKYDLYINVYGGGISGQSGAIRHGISRALFELDESNKMILRSNGFLTRDSRKVERKKFGQKKARKSFQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BLOFL (30S ribosomal protein S9 OS=Blochmannia floridanus GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 59/125 (47.20%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ G G  +IN     +Y   +   +  IK PL         D ++   GGG+SGQA AI+ G+ RALL+ + + +S L+  GL+TRDSR+VERKK GL KAR++PQ+SKR
Sbjct:    7 YGTGRRKSASARVFLRFGNGDIVINNLSLDKYFPKDNFQI-IIKKPLEVTNVLNILDAYITVIGGGVSGQAGAISHGITRALLQYNAEFKSVLRATGLMTRDSRMVERKKVGLRKARRSPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BARQU (30S ribosomal protein S9 OS=Bartonella quintana GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV L+ G GK  IN ++  +Y    P+    ++ P+V +  +T +D+     GGGLSGQA A+  G+++AL     + R+ LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   38 YATGKRKGAVARVWLKPGFGKITINNKEFDKYF-ARPVLRMILRQPIVAINRDTQFDIIATVTGGGLSGQAGAVRHGISKALTYYEPEFRTILKKRGFLTRDSRVVERKKYGKAKARRSFQFSKR 161          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_AMOA5 (30S ribosomal protein S9 OS=Amoebophilus asiaticus (strain 5a2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 2
Query:   98 QTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + I   GRRK +IAR+ L  G G   IN    ++Y     + +  +K PL  +     YD+ +   GGG  GQA+A+ LG+ARAL +V+   R  LKKEG LTRDSR+VERKK G  KARK+ Q+SKR
Sbjct:    2 EIINAVGRRKTSIARIYLSNGKGDISINKTSLEKYFPSEAI-ITLVKQPLQQIEAIDQYDIKINVKGGGFKGQAEAVRLGIARALCEVNPSFRPSLKKEGFLTRDSRMVERKKYGHKKARKSFQFSKR 128          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_PSEAK (30S ribosomal protein S9, chloroplastic OS=Pseudendoclonium akinetum GN=rps9 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 61/123 (49.59%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  113 TGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            TGRRK +IA V L  G G+F IN     EY+Q     +  I+ PL  L  +  +++ +K  GGGL GQ  AI LG+ARAL +    +R+ LK +G LTRD R  ERKK GL KARKAPQ+SKR
Sbjct:   19 TGRRKTSIATVQLFPGNGEFTINGISGIEYMQQKEELIFAIQEPLHFLKLKNEFNLIIKVKGGGLVGQVNAIKLGIARALCEFDLTYRNSLKLKGFLTRDPRCKERKKYGLKKARKAPQFSKR 141          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_PSEE43.031e-2347.2030S ribosomal protein S9 OS=Pseudomonas entomophil... [more]
RS9_METPB3.031e-2346.4030S ribosomal protein S9 OS=Methylobacterium popul... [more]
RS9_LACBA3.031e-2349.1930S ribosomal protein S9 OS=Lactobacillus brevis (... [more]
RS9_HAEPS3.031e-2344.6230S ribosomal protein S9 OS=Haemophilus parasuis s... [more]
RS9_BRASO3.031e-2348.0030S ribosomal protein S9 OS=Bradyrhizobium sp. (st... [more]
RS9_BORAP3.031e-2345.9730S ribosomal protein S9 OS=Borrelia afzelii (stra... [more]
RS9_BLOFL3.031e-2347.2030S ribosomal protein S9 OS=Blochmannia floridanus... [more]
RS9_BARQU3.031e-2345.6030S ribosomal protein S9 OS=Bartonella quintana GN... [more]
RS9_AMOA53.031e-2346.0930S ribosomal protein S9 OS=Amoebophilus asiaticus... [more]
RR9_PSEAK3.031e-2349.5930S ribosomal protein S9, chloroplastic OS=Pseuden... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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