BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PHOLL (30S ribosomal protein S9 OS=Photorhabdus luminescens subsp. laumondii GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+G  +IN R  + Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL+   +  RS L+K G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSSARVFIKPGSGNIVINKRSLEVYF-GRETARMVVRQPLELVDMLGKLDLYITVKGGGISGQAGAIRHGITRALMAYDETLRSDLRKAGFVTRDAREVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_COXBU (30S ribosomal protein S9 OS=Coxiella burnetii GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH------RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK + ARV L+ GTG+ IIN     EY  G       ++ PLV L  ++ +DV+    GGG SGQA AI  G+ RAL++  ++       RS L+K G +TRD R+VERKK GLH AR+  Q+SKR
Sbjct:   11 GTGRRKTSSARVFLRSGTGQIIINGLPLDEYF-GRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSGQAGAIRHGITRALIQYDEEGGEGGTWRSTLRKAGFVTRDPRMVERKKVGLHGARRGTQFSKR 139          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_COXBR (30S ribosomal protein S9 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH------RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK + ARV L+ GTG+ IIN     EY  G       ++ PLV L  ++ +DV+    GGG SGQA AI  G+ RAL++  ++       RS L+K G +TRD R+VERKK GLH AR+  Q+SKR
Sbjct:   11 GTGRRKTSSARVFLRSGTGQIIINGLPLDEYF-GRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSGQAGAIRHGITRALIQYDEEGGEGGTWRSTLRKAGFVTRDPRMVERKKVGLHGARRGTQFSKR 139          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_COXBN (30S ribosomal protein S9 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH------RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK + ARV L+ GTG+ IIN     EY  G       ++ PLV L  ++ +DV+    GGG SGQA AI  G+ RAL++  ++       RS L+K G +TRD R+VERKK GLH AR+  Q+SKR
Sbjct:   11 GTGRRKTSSARVFLRSGTGQIIINGLPLDEYF-GRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSGQAGAIRHGITRALIQYDEEGGEGGTWRSTLRKAGFVTRDPRMVERKKVGLHGARRGTQFSKR 139          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_COXB2 (30S ribosomal protein S9 OS=Coxiella burnetii (strain CbuG_Q212) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH------RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK + ARV L+ GTG+ IIN     EY  G       ++ PLV L  ++ +DV+    GGG SGQA AI  G+ RAL++  ++       RS L+K G +TRD R+VERKK GLH AR+  Q+SKR
Sbjct:   11 GTGRRKTSSARVFLRSGTGQIIINGLPLDEYF-GRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSGQAGAIRHGITRALIQYDEEGGEGGTWRSTLRKAGFVTRDPRMVERKKVGLHGARRGTQFSKR 139          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BRASB (30S ribosomal protein S9 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G+GK  +N RD + Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   37 YATGKRKDAVARVWIKPGSGKVTVNTRDIEVYF-ARPVLRMMIQQPLVAAARNGQYDVICTVAGGGLSGQAGAVRHGLSKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BORDL (30S ribosomal protein S9 OS=Borrelia duttonii (strain Ly) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 58/124 (46.77%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV ++EG G   IN+++   Y+Q   L    +  PL        YD+++  +GGG+SGQA AI  G+ARAL  + ++++  LK  G LTRDSR VERKK G  KARK+ Q+SKR
Sbjct:   14 GTGRRKSSVARVYIREGKGDIKINHKNFDVYMQLEKLKTIALS-PLALTHTLGKYDIYINVYGGGISGQAGAIRHGIARALFDLDEEYKMVLKSNGFLTRDSRKVERKKFGKKKARKSFQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BART1 (30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G+GK IIN ++  +Y    P+    ++ P+V    +T +D+     GGGLSGQA AI  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   38 YATGKRKDAVARVWIKPGSGKIIINNKEFDKYF-ARPVLRMILRQPIVATNRDTQFDIVATVAGGGLSGQAGAIRHGISKALTYYEPELRPILKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 161          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAMD5 (30S ribosomal protein S9 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+G  ++N R  + Y  G       +  PL  L     +D+++   GGG+SGQA AI  G+ RAL+   +  R  L+K G +TRD+R VERKK G  KAR+ PQ+SKR
Sbjct:    7 YGTGRRKSSAARVFIKPGSGNIVVNQRSLEVYF-GRETARMVVYQPLELLNMMNKFDLYITVKGGGISGQAGAIRHGITRALMAYDESLRPELRKAGFVTRDAREVERKKVGFRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_DESDG (30S ribosomal protein S9 OS=Desulfovibrio desulfuricans (strain G20) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A AR  L  GTGK ++N R   EY     L +  I+ PL       S+D+ V   GGG+ GQA+A+  G++RALL+V  + RS LK+ G LTRD+R  ERKK G   AR   QYSKR
Sbjct:    7 YGTGRRKTATARTRLYSGTGKIVVNGRPYDEYFPRKSLQM-IIRQPLALTKNVESFDIHVNVQGGGVRGQAEAVRHGISRALLEVDVEMRSSLKRAGFLTRDARKKERKKYGQRAARARFQYSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_PHOLL6.751e-2343.8530S ribosomal protein S9 OS=Photorhabdus luminesce... [more]
RS9_COXBU6.751e-2346.9230S ribosomal protein S9 OS=Coxiella burnetii GN=r... [more]
RS9_COXBR6.751e-2346.9230S ribosomal protein S9 OS=Coxiella burnetii (str... [more]
RS9_COXBN6.751e-2346.9230S ribosomal protein S9 OS=Coxiella burnetii (str... [more]
RS9_COXB26.751e-2346.9230S ribosomal protein S9 OS=Coxiella burnetii (str... [more]
RS9_BRASB6.751e-2348.0030S ribosomal protein S9 OS=Bradyrhizobium sp. (st... [more]
RS9_BORDL6.751e-2346.7730S ribosomal protein S9 OS=Borrelia duttonii (str... [more]
RS9_BART16.751e-2346.4030S ribosomal protein S9 OS=Bartonella tribocorum ... [more]
RS9_HAMD58.818e-2343.2030S ribosomal protein S9 OS=Hamiltonella defensa s... [more]
RS9_DESDG8.818e-2348.0030S ribosomal protein S9 OS=Desulfovibrio desulfur... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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