BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BUCBP (30S ribosomal protein S9 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV L+ GTG   IN R    Y       L  ++ P+  +      D+++   GGG+SGQ  AI  G++RAL+K     R+ L+K G +TRDSR VERKK G  KARK PQ+SKR
Sbjct:    7 YGTGRRKSSSARVFLKTGTGNITINNRKLNNYFSRRTARLIILQ-PIEFVNMSKKCDLYITVKGGGISGQVGAIRHGISRALIKYDSSFRNELRKLGFITRDSRQVERKKVGFRKARKRPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_ACTPJ (30S ribosomal protein S9 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 2 
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV ++ G G   IN R    Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    3 AANQNYGTGRRKSSSARVFIKPGNGNITINQRSLDVYF-GRETSRMVVRQPLELVELLDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR 131
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_ACTP7 (30S ribosomal protein S9 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 2 
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV ++ G G   IN R    Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    3 AANQNYGTGRRKSSSARVFIKPGNGNITINQRSLDVYF-GRETSRMVVRQPLELVELLDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR 131
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_VARPS (30S ribosomal protein S9 OS=Variovorax paradoxus (strain S110) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L++GTGK  +N +D +E+  G    +   K PLV      ++DV V  +GGG SGQA A   G+ RAL+      +  L + G +TRD+R VERKK GLH AR+  Q+SKR
Sbjct:    8 GTGRRKSSVARVFLKKGTGKITVNGKDIQEFF-GRETSIMIAKQPLVLTNNLEAFDVMVNVNGGGESGQAGATRHGITRALIDYDASLKPVLSQAGYVTRDAREVERKKVGLHSARRRKQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHESW (30S ribosomal protein S9 OS=Shewanella sp. (strain W3-18-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2 
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHESR (30S ribosomal protein S9 OS=Shewanella sp. (strain MR-7) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2 
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHESM (30S ribosomal protein S9 OS=Shewanella sp. (strain MR-4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2 
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHESA (30S ribosomal protein S9 OS=Shewanella sp. (strain ANA-3) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2 
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHEPC (30S ribosomal protein S9 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2 
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHEON (30S ribosomal protein S9 OS=Shewanella oneidensis GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2 
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_BUCBP8.818e-2345.6030S ribosomal protein S9 OS=Buchnera aphidicola su... [more]
RS9_ACTPJ8.818e-2344.6230S ribosomal protein S9 OS=Actinobacillus pleurop... [more]
RS9_ACTP78.818e-2344.6230S ribosomal protein S9 OS=Actinobacillus pleurop... [more]
RS9_VARPS1.152e-2245.9730S ribosomal protein S9 OS=Variovorax paradoxus (... [more]
RS9_SHESW1.152e-2242.3130S ribosomal protein S9 OS=Shewanella sp. (strain... [more]
RS9_SHESR1.152e-2242.3130S ribosomal protein S9 OS=Shewanella sp. (strain... [more]
RS9_SHESM1.152e-2242.3130S ribosomal protein S9 OS=Shewanella sp. (strain... [more]
RS9_SHESA1.152e-2242.3130S ribosomal protein S9 OS=Shewanella sp. (strain... [more]
RS9_SHEPC1.152e-2242.3130S ribosomal protein S9 OS=Shewanella putrefacien... [more]
RS9_SHEON1.152e-2242.3130S ribosomal protein S9 OS=Shewanella oneidensis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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