BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHEB9 (30S ribosomal protein S9 OS=Shewanella baltica (strain OS195) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHEB8 (30S ribosomal protein S9 OS=Shewanella baltica (strain OS185) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHEB5 (30S ribosomal protein S9 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHEB2 (30S ribosomal protein S9 OS=Shewanella baltica (strain OS223) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_NITHX (30S ribosomal protein S9 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G GK ++N R+ + Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   35 YATGKRKDAVARVWIKPGAGKILVNAREVEVYF-ARPVLRMMIQQPLVAAARAGQYDVVCTVAGGGLSGQAGAVRHGLSKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_METS4 (30S ribosomal protein S9 OS=Methylobacterium sp. (strain 4-46) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G+G   +N R  + Y    P+    ++ PL        YD+ V   GGGLSGQA A+  G+A+AL     + RSPLK+EG LTRD RVVERKK G  KAR++ Q+SKR
Sbjct:   39 YATGKRKDAVARVWIKPGSGVITVNDRPVETYF-ARPVLRMILQQPLQVANRADQYDIVVTVTGGGLSGQAGAVRHGLAKALTHYEPELRSPLKREGFLTRDPRVVERKKYGRKKARRSFQFSKR 162          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_METRJ (30S ribosomal protein S9 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G G   IN R  + Y    P+    ++ PL   G    YD+ V   GGGLSGQA A+  G+++AL     + R+PLK+EG LTRD+RVVERKK G  KAR++ Q+SKR
Sbjct:   38 YATGKRKDAVARVWIKPGNGTVTINKRPVETYF-ARPVLRMILRQPLEIAGRVDQYDITVTVAGGGLSGQAGAVRHGLSKALTYYEPELRAPLKREGFLTRDARVVERKKYGRKKARRSFQFSKR 161          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_METPP (30S ribosomal protein S9 OS=Methylibium petroleiphilum (strain PM1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV +++G+G+  +N +  ++Y  G    +  +K PL       ++D+ V  HGGG SGQA A+  GV RAL+      +S L + G +TRD+R VERKK GLH AR+  Q+SKR
Sbjct:    7 YGTGRRKSSVARVFIKKGSGQITVNGKPVEQYF-GRQTSIMIVKQPLFLTNNVEAFDIKVNVHGGGESGQAGAVRHGVTRALIDYDAALKSELSRAGFVTRDAREVERKKVGLHGARRRKQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_LEIXX (30S ribosomal protein S9 OS=Leifsonia xyli subsp. xyli GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 65/123 (52.85%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSP-LKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK AIARV L  G G   +N R   +Y   N L  Q I  P   L    SYDV  +  GGG SGQA A+ L +ARAL ++ +++  P LKK G LTRD+RV ERKKAGL KARKA Q+SKR
Sbjct:   47 GRRKEAIARVRLVPGAGAVTVNGRAFADYFP-NKLHQQLITDPFKVLDLVGSYDVIARITGGGPSGQAGALRLAIARALNEIDRENNRPTLKKAGFLTRDARVTERKKAGLKKARKASQFSKR 168          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_GEOSF (30S ribosomal protein S9 OS=Geobacter sp. (strain FRC-32) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 60/130 (46.15%), Postives = 80/130 (61.54%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA + +GTG+RK +IARV L+ GTG   +N++   EY  G       +K PL        +D++V   GGG SGQA AI  G+ +ALL+V    R+PLKK G +TRDSR+ ERKK G   AR + Q+SKR
Sbjct:    2 AAASFYGTGKRKSSIARVWLKPGTGVITVNHKTLDEYF-GRETSKMVVKQPLELTENLGKFDIYVTVSGGGDSGQAGAIKHGITKALLEVDAALRTPLKKAGFVTRDSRIKERKKYGKKSARASFQFSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_SHEB91.152e-2242.3130S ribosomal protein S9 OS=Shewanella baltica (st... [more]
RS9_SHEB81.152e-2242.3130S ribosomal protein S9 OS=Shewanella baltica (st... [more]
RS9_SHEB51.152e-2242.3130S ribosomal protein S9 OS=Shewanella baltica (st... [more]
RS9_SHEB21.152e-2242.3130S ribosomal protein S9 OS=Shewanella baltica (st... [more]
RS9_NITHX1.152e-2247.2030S ribosomal protein S9 OS=Nitrobacter hamburgens... [more]
RS9_METS41.152e-2246.4030S ribosomal protein S9 OS=Methylobacterium sp. (... [more]
RS9_METRJ1.152e-2246.4030S ribosomal protein S9 OS=Methylobacterium radio... [more]
RS9_METPP1.152e-2243.2030S ribosomal protein S9 OS=Methylibium petroleiph... [more]
RS9_LEIXX1.152e-2252.8530S ribosomal protein S9 OS=Leifsonia xyli subsp. ... [more]
RS9_GEOSF1.152e-2246.1530S ribosomal protein S9 OS=Geobacter sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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