BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_RHOPS (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G GK  +N R+ + Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   35 YATGKRKDAVARVWIKPGAGKVTVNAREVEVYF-ARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MANSM (30S ribosomal protein S9 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV ++ G+GK  IN R+   Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    3 AANQNYGTGRRKSSSARVFIKPGSGKITINQRELDVYF-GRETSRMIVRQPLELVEMTEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRPVLRAAGFVTRDARRVERKKVGLRKARRRPQFSKR 131          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BARHE (30S ribosomal protein S9 OS=Bartonella henselae GN=rpsI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22
Identity = 56/125 (44.80%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G+GK  IN ++  +Y    P+    ++ P+V    +T +D+     GGGLSGQA A+  G+++AL     + R+ LKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   38 YATGKRKDAVARVWIKPGSGKITINNKEFDKYF-ARPVLRMILRQPIVATNRDTQFDIIATVAGGGLSGQAGAVRHGISKALTYYEPELRTILKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 161          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_TREPS (30S ribosomal protein S9 OS=Treponema pallidum subsp. pallidum (strain SS14) GN=rpsI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 58/124 (46.77%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV ++ G G   +N RD   Y       L+ ++ PL     E  YDV V  +GGGL GQA A   G+ARAL++    +++ L+  GLLTRDSR+VERKK G   AR+  Q+SKR
Sbjct:    7 GTGRRKTAVARVCIRMGNGNVTVNRRDVGAYFP-TAEQLRRVREPLFATANERRYDVIVNVYGGGLDGQAGACAHGIARALVRADASNQASLRAGGLLTRDSRMVERKKYGQRGARRRFQFSKR 129          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_TREPA (30S ribosomal protein S9 OS=Treponema pallidum GN=rpsI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 58/124 (46.77%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV ++ G G   +N RD   Y       L+ ++ PL     E  YDV V  +GGGL GQA A   G+ARAL++    +++ L+  GLLTRDSR+VERKK G   AR+  Q+SKR
Sbjct:    7 GTGRRKTAVARVCIRMGNGNVTVNRRDVGAYFP-TAEQLRRVREPLFATANERRYDVIVNVYGGGLDGQAGACAHGIARALVRADASNQASLRAGGLLTRDSRMVERKKYGQRGARRRFQFSKR 129          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHELP (30S ribosomal protein S9 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +A   +GTGRRK + ARV  + G+G  ++N R   EY  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 SATQYYGTGRRKTSTARVFAKVGSGNIVVNQRPLDEYF-GRETARMVVRQPLELVEMTEKLDIYVTVKGGGITGQAGAIRHGITRALMELDEALRPSLRAAGFVTRDARKVERKKVGLRKARRKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_RICCK (30S ribosomal protein S9 OS=Rickettsia canadensis (strain McKiel) GN=rpsI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +A   + TG+RK AIARV L+ G GK ++N +   +Y      +++ I  P V       YDV     GGG+SGQ  AI  G+++AL K + D  + L+K GLLTRDSRVVERKK G  KARK  Q+SKR
Sbjct:   33 SASKFYATGKRKNAIARVWLKVGKGKIVVNKKTIDQYFSSET-YVKTILQPFVLTKTIDQYDVICTVRGGGISGQKGAILHGISKALDKSAPDFHAMLRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 161          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_RALEH (30S ribosomal protein S9 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV ++ G G  I+N +  KEY       L  ++ PL    +  ++D+ V   GGG +GQA A+  G+ RAL+      +S L K G +TRD+R VERKK G HKAR+  Q+SKR
Sbjct:    7 YGTGRRKSAVARVFIKSGKGDIIVNGKPIKEYF-ARETSLMIVRQPLELTAHAETFDIKVNVTGGGETGQAGAVRHGITRALIDYDATLKSALSKAGYVTRDAREVERKKVGFHKARRRKQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_METNO (30S ribosomal protein S9 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpsI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ G G   +N R    Y    P+    ++ PL        YD+ V   GGGLSGQA A+  G+ARAL     + RSPLK+EG LTRD RVVERKK G  KAR++ Q+SKR
Sbjct:   39 YATGKRKDAVARVWIKPGAGTITVNDRPVDTYF-ARPVLRMILQQPLHVANRVDQYDIVVTVTGGGLSGQAGAVRHGLARALTYYEPELRSPLKREGFLTRDPRVVERKKYGRKKARRSFQFSKR 162          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_METI4 (30S ribosomal protein S9 OS=Methylacidiphilum infernorum (isolate V4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 63/128 (49.22%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  104 IFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKV--PLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            I  TGRRK A A V+L+ G G+  IN +D + Y    P ++   +V  PL  +     +D+  KA GGGL GQAQA+ L V+RAL+K    +RS LKKEGLLTRD R+ ERKK G   ARK  Q+SKR
Sbjct:   12 IQATGRRKTATATVILKPGKGEVSINGKDLEFYF---PTFVHRYEVFKPLEVIEGTKKFDIIAKARGGGLMGQAQALKLAVSRALIKYDPSYRSLLKKEGLLTRDPRMKERKKTGQPGARKRFQFSKR 136          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_RHOPS1.504e-2247.2030S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_MANSM1.504e-2243.8530S ribosomal protein S9 OS=Mannheimia succinicipr... [more]
RS9_BARHE1.504e-2244.8030S ribosomal protein S9 OS=Bartonella henselae GN... [more]
RS9_TREPS1.964e-2246.7730S ribosomal protein S9 OS=Treponema pallidum sub... [more]
RS9_TREPA1.964e-2246.7730S ribosomal protein S9 OS=Treponema pallidum GN=... [more]
RS9_SHELP1.964e-2242.3130S ribosomal protein S9 OS=Shewanella loihica (st... [more]
RS9_RICCK1.964e-2246.1530S ribosomal protein S9 OS=Rickettsia canadensis ... [more]
RS9_RALEH1.964e-2244.0030S ribosomal protein S9 OS=Ralstonia eutropha (st... [more]
RS9_METNO1.964e-2247.2030S ribosomal protein S9 OS=Methylobacterium nodul... [more]
RS9_METI41.964e-2249.2230S ribosomal protein S9 OS=Methylacidiphilum infe... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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