BQ622929 | Citrus Genome Database

Overview


Name	BQ622929
Unique Name	BQ622929
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	486

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1721	contig	Csv1_Contig1721:317..801.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.449e-25
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+ +G+VDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEE+L
Sbjct:   43 GACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96

HSP 2 Score: 43.8986 bits (102), Expect = 5.449e-25
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   25 ILDAAEEAGLDLPYSCRAGA 44

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.449e-25
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+ +G+VDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEE+L
Sbjct:   43 GACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96

HSP 2 Score: 43.8986 bits (102), Expect = 5.449e-25
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   25 ILDAAEEAGLDLPYSCRAGA 44

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.970e-25
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +GTVDQS+QSFLDD Q+G GFVLTC AYPTSD TI+TH+EE L
Sbjct:   72 GACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125

HSP 2 Score: 43.8986 bits (102), Expect = 6.970e-25
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   54 ILDAAEEAGLDLPYSCRAGA 73

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.092e-25
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSCTGK++ G VDQSEQSFLDDDQ+ EGFVLTC AYP  D+TIETH EE+L
Sbjct:   42 GACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95

HSP 2 Score: 42.3578 bits (98), Expect = 7.092e-25
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDA EEAGLDLPYSCRAGA
Sbjct:   24 ILDAGEEAGLDLPYSCRAGA 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.202e-24
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDVTI+THKEE+L
Sbjct:   45 GACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98

HSP 2 Score: 38.5058 bits (88), Expect = 1.202e-24
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G DLP+SCRAGA
Sbjct:   27 ILDAAEEQGYDLPFSCRAGA 46

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.202e-24
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSCTGKV +GTVDQ +QSFLDDDQI  GFVLTC A+P  DVTIETHKEE++
Sbjct:   42 GSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95

HSP 2 Score: 42.3578 bits (98), Expect = 1.202e-24
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAEEAGLDLPYSCRAG+
Sbjct:   24 VLDAAEEAGLDLPYSCRAGS 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.564e-24
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSGTVDQS+QSFLDDDQI +G+VLTC AYPTSD+ IETHKEE+L
Sbjct:   45 GACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98

HSP 2 Score: 38.891 bits (89), Expect = 1.564e-24
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AE+ GLDLPYSCRAGA
Sbjct:   27 ILDIAEDQGLDLPYSCRAGA 46

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.972e-24
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKVVSG+VDQS+QS+LDD QI +G+VLTC AYPTSDV IETHKEEEL G
Sbjct:   94 GSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTG 149

HSP 2 Score: 37.7354 bits (86), Expect = 1.972e-24
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   76 ILDQAEEDGIDLPYSCRAGS 95

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.975e-24
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVV+G+VDQS+QSFLDDDQI  G+VLTCAAYP++DVTIETHKEEEL
Sbjct:   91 GSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144

HSP 2 Score: 37.7354 bits (86), Expect = 1.975e-24
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LD AEE G+DLPYSCRAG+
Sbjct:   73 VLDQAEEEGIDLPYSCRAGS 92

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.567e-24
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV SG+V+Q + SFLDDDQI EG+VLTC AYPT DVTIETHKEEEL
Sbjct:   93 GSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146

HSP 2 Score: 41.9726 bits (97), Expect = 2.567e-24
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAG+DLPYSCRAG+
Sbjct:   75 ILDAAEEAGIDLPYSCRAGS 94

The following BLAST results are available for this feature:

BLAST of BQ622929 vs. ExPASy Swiss-Prot

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109


Match Name	E-value	Identity	Description
FER_SYNY4	5.449e-25	74.07	Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ...	[more]
FER_SYNY3	5.449e-25	74.07	Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803...	[more]
FER_CHLRE	6.970e-25	75.93	Ferredoxin, chloroplastic OS=Chlamydomonas reinhar...	[more]
FER_GLEJA	7.092e-25	75.93	Ferredoxin OS=Gleichenia japonica PE=1 SV=1	[more]
FER1_ANAVT	1.202e-24	79.63	Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2...	[more]
FER1_PHYAM	1.202e-24	75.93	Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1	[more]
FER1_NOSMU	1.564e-24	77.78	Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2	[more]
FER1_MAIZE	1.972e-24	78.57	Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE...	[more]
FER_SILPR	1.975e-24	81.48	Ferredoxin, chloroplastic OS=Silene pratensis GN=P...	[more]
FER1_MESCR	2.567e-24	77.78	Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT